RNA id: XM_039795027.1


Basic Information

Item Value
RNA id XM_039795027.1
length 2678
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC120555875
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3223869 ~ 3236019 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACACAAAGCAAACCGAGAAGAAGAAAACCTGTCGGTTTAGTTCCTGGTTGCATAAAGTCAAGACTCACCCTCTGTTTAGATTGTTGTTTTCTTCATCTGTAGTCTCAAACGGTGATTTCATTTCGACCGAAATGTTCAAAAGCTTCGGGACGTGGTTGGGTCTGGAGGACCAGACGTACACGAAGGCGTCGGACGACACAGAAAAGCTGAGTGGGGAGCAGGAAGAAAAGGTGGTGGAAGCACAGAACGAGGTAAACAAACAGCAACCAGCTGGCCAGGATGGAGAACCAGAGGCCGACCGAGAAGAAAACTCTGAGCTCGGCAAAGGACTCGGGGATTACATCTTCAGTTTTGCCACCAGTGCCACCAGGAAGATCTCTGATTCGGTGGTAGAGACGGCGCAGAGCATCAAGAAGACGGTGGAAGAAGGGAAGATCGACGGCATCATAGACAAGacTTTCCTAGGAGACTTTCAAAAGGAGCAAGAGAAGTTTGTCCAAGAGAAGAAGGCAAAAAAATCAGAAGCGGCGGTGCCTCCCTGGGTCGGCTACAACGAGGAGGAGACGATCCAGCAACAGATCCTTGCTCTGTCAGCCGACAAGAGAAACTTCTTGCGAGACCCCCCCGCTGGTGTTCAGTTCCACTTCGACATGGAGCAGATGTATCCTCTGGCTGCAGTGATGCTGGAGGAAGACCAGCTCCTCAACTGCATGCGCTTTGACCTGGTCCCAAAACATGTGAAGGAGGAGGTGTTCTGGAGGAATTATTTCTACCGGGTGTCTCTGGTCAAGCAGTCGGCCCAGCTGACCGCGCTGGcagcccagcagcagcagaaggacGGCGAGGACAGAGCGGCCAGCGTTTCGTCCGAGGACGTCGTTCTAACAGacAATGTCAGACCAAAAACACCACCAGTTTCTATCGGCGACATACAGAAGCCAccccaggaggaggaggaggaggaggaggaggaggaggagatgtcgACCAGCCCCGGGGTGTCTGAGTTTGTGAGCGATGCTTTCGACTCGACAGGCATCGACCAGGAGGACCTGAGGAAAGAGATGGAGCAGCTGGTGCTGGATAAGAAGGAGAGCGTCCCTTCTCCTGATGACGAGTCAGCCGACTGGGagaaggagctgcagcaggagCTCCAGGAGTACGAGGTGGTGAGCGGCTCCGACAACAAAGACGACCAATGGGATCAAGAGATCGAGAAGATGCTCCAGGCCGACGACAGCTAGACAAACGCCGTGTGTCCGTGTCCTGTTCGGCGATCTGCCCTCTCCGCACAACTGTGATTACTATCTTGTAAGCATTCTCCTGTACCGGATGAAGGTGTAGATCCAATAATAGCAAGAGAGCATCGCCTCTGCTGGAAACAAAGGGTATGttcagtagggctgcacgatatgagggaaacatgcgataacgttgttgaatatttttcaataaACGGATATTAAAGTGGACTCAGTTCGGAATTTCTGCTGcgttcagtattctgctaaaaaaaaaacaaatgtcatcTAACAAATTTAAtggaatataaaaggcaccactaaaaaaaaaaaaaaagtctttcgcgatatgtcgcagcctttccaCATGTGTTTATTGCGGCAGGTGACATCGcgataaaaaagtgatatattgtgcagccctaatgttcAGGCGTATTTATAAAGCGCTACTTTATTGCTCCTTCCTAAATTAATTTCCTCTACTTGCTTTCCCaaaccccctctctctctctctctctctctttatgatGGGGAAAAGTCGCTAGAGGGCGCTCCAGTACAGTGGGTTTTATTATGGCGGGGGCTTGTTTTGAAATGACGTCACATTATTTCACACTGCTGCTTTCCGGTGGGGTGTACAGTAAAGTCTTGATATAGGTATAGTCAAATGTAAAGTTACatgtatataaataaagaggatTTTTAACACTATACTTTACTTCAAGTTGCATTCCCCTTTCATTACATCTGCTCATCTATCTTTTTGCATTTTCTATCGTGTTTTCACAAACTCCCATGTGCACGTCTGCTTTGTTTAACCCCTTATCCCTTTTTTTccaatatgtatgtatttgtttttgattaacaaaagagaaaacatgATTGCATTAAGCAAtcagccacaaaaaaaaattataatgaaggtttaaagtaaaaaaaaatgaaagtgaaaatgACATATTTGACCGGTTATCTGACAGTACACATGATGTTTAAGGTGGACACGAAGCCCAGAGGAACTAGGTTTTAAAATGGCAGAAACTAGTGTTTCGAACAATGCTATGAAGTCTTTTTTTATAAGGCTACAAAAACACATGGCATATATTCCTTTTTATACCGGTACTTTATAGGCATTCTCTATGAAGTCCATCCAATGACGCAGAATAAACACTAACGTAGacgttaaaaaataataataaagaacgTGATGTGGTAAGGAGAGACGGAACGACGAGCATTGTAGAAATATTTAAATCGAAGATTTGAAGAGATCATTCTTGTGAAGGCCTTTTTGTTATGTTTCCGCAGGTGTATTTATTTTGCTTATCATATGTATTGTAACCCACAAACATTGGATAAGACAAGTTTGGCAAGTGAAACCCGGTTATGTACTGTGCGTGATCCAGGCAATAAATTACAAGGATTCCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33966 lncRNA upstream 83482 3139689 ~ 3140387 (+) True G25288
TU33958 lncRNA upstream 251959 2971607 ~ 2971910 (+) True G25281
TU33956 lncRNA upstream 253611 2969770 ~ 2970258 (+) True G25279
TU33937 lncRNA upstream 506409 2717070 ~ 2717460 (+) True G25262
XR_005638739.1 lncRNA upstream 582941 2640084 ~ 2640928 (+) True LOC120555634
TU33993 lncRNA downstream 73356 3309375 ~ 3315243 (+) False LOC120555484
TU33995 lncRNA downstream 73356 3309375 ~ 3313695 (+) True LOC120555484
TU33996 lncRNA downstream 73356 3309375 ~ 3379915 (+) False LOC120555484
TU33989 lncRNA downstream 78335 3314354 ~ 3317944 (+) False LOC120555484
XR_005638717.1 lncRNA downstream 81046 3317065 ~ 3321414 (+) False LOC120555484
XM_039795089.1 mRNA upstream 911773 2240414 ~ 2312096 (+) True adamts18
XM_039794589.1 mRNA upstream 1041115 2039463 ~ 2182754 (+) True phkb
XM_039794588.1 mRNA upstream 1041115 2039464 ~ 2182754 (+) False phkb
XM_039794587.1 mRNA upstream 1041115 2039464 ~ 2182754 (+) False phkb
XM_039795363.1 mRNA upstream 1405875 1789953 ~ 1817994 (+) True slc7a10a
XM_039795613.1 mRNA downstream 14589 3250608 ~ 3273178 (+) False adgrg1
XM_039795611.1 mRNA downstream 14590 3250609 ~ 3273178 (+) True adgrg1
XM_039795612.1 mRNA downstream 14590 3250609 ~ 3273178 (+) False adgrg1
XM_039794180.1 mRNA downstream 44057 3280076 ~ 3305488 (+) True slc7a6
XM_039794181.1 mRNA downstream 44059 3280078 ~ 3305488 (+) False slc7a6
TU33868 other upstream 1140550 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 1381058 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 548914 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 1334354 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 2798190 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 2815868 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 2816796 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile