RNA id: XM_039795029.1


Basic Information

Item Value
RNA id XM_039795029.1
length 2669
RNA type mRNA
GC content 0.48
exon number 12
gene id gramd2aa
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16031670 ~ 16068535 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGAGAGATTCAGAGGGAAGGAGGGGTTAAGATAGCAATGTGCTGAGCCAATGGCTTTTGCGCAGAGCAGCTGGCTGGCATCAGGACAGGCCGCTCGGAGGAAGGATACCTCGAGAACGGCTCCTCTTCGCTTGCTGTAGGACACTGAGGGGGTGACTTCCAGGAGGTGTTCATGGGATGCACTATCTACGCTGCCAGCCCTAAGGCCCTGCCCGCCGACGAGGCCCCAGGCCAGGACAGATACTACCAGCTCCCCCACCTCCGCCACCCTCATGGTAACTGCGGTCAGAGGATAGCAGCCGGCAGAGCCAGGGCCAGGAGCATGACTGATCAGCCGGAGCAGAGCGAAGAAACAGGCCTGCTCTCAACACAGGACCTGGACCACTCCAAGGACGACGACACACACGGCCACTTcagGTTTCAGCTGATTGAAGACCTGTCCTATGAAGATGTGAAGAAATGTTACCGGGGCTCGTGTGTGTCTTGCAGCGGCTTGCTCCAGGCCTTGGATgtgcgcgagtgtgtgtgtgtgtacggtgCCAACGTGCTGAGCCTGGTGCAGAGCTCGCGACCTTTGAGGGAGAGGGTGGTGTCTGCGGCGAGCGGAGCCAGAGTGGCCGGTGGTGGCGGAGTGGCGGGTTGCGCCGGTGGTGCTGTGCAGGCAGGCCGGTCTGCTAAGGAGATGCTCATGACTCTGCCCTGTCCCTCTGCACAGACTGTCAGCAAGTACAACTCGCAGTACCACAAACTGTTCCAGTGTGTGCCCAAGGATGAGATCCTCATGAAAGTGTACTCCTGTGCTCTTCTCAGAGATATTCTTCTACAAGGCCGGCTCTATATTTCCAGAAACTGGCTGTGTTTCTATGCCAACCTCTTTGGCAAGGACATTAAGGTGGCTATCCCTGTTGTTTCCGTGAGGTTGGTGAAGAAGCACAAAACAGCGGGCCTTGTACCCAATGGCTTGGCTATAACCACGGACACCGGCCAGAAGtatgtatttgtatctcTGCTGTCAAGAGACAGTGTATATGATGTCCTTCGTAGGATCTGCACTCACCTACAGGTCAATGGGAAGAGTCTGAGCTTGAAGCAGTTCATGGAGAAGCCGACCTTATCGCTGGACGAGTTCCCAGTTCCAGACGAGTTCCCAGTGGTTGACGAATTTCCATCAGTGTTAAAGTGGAGAAGGAAACCCTCAGTGGTGTCTGTGTCGTCCTCCCTTCCTGACCTCCTGGGGAACTCCCCCAGCAGCCTGAGCGCCGTAGATACACCCTTCAAATCGGAACAGCCGCTGGAAGAGCGAgctctgcagacagacagaggtctTTTATCAGAGCCACTGGCAGAGCTGGGCCAGATGGAGTACCAGCTGCTCAAGTTCTTCACCCTGCTAATTATTCTCCTCATCCTGTCATCGTGCTACCTGGCCTTTCGTGTGTGCAGTCTGGAGCAGCAGTTGTCCTTCCTCAGTAACCCAAATCTGCCCCTGAGAGAGAGGTAACCACTGCTCTCCGCTGTGACCTATTGGATTAGCGGCTGTTTTCTCTTCTCATGCTTTGAGCTGATGATGCCCTCCTGCACATATCCAGGACCAGCTTTAGAGCCCAGAAAAGATAAACCCCTGCACCCGCCGCGAAACATGAAGGAGCAACCGAAACCCGAGTCCAGGCATCTTACAGACCTTCCCCTCCCCGGAATGACTTCCGATTTAGTGATCACTTCCAGACTATGCAAACAAGACTgtctgtctatttatttctgaaTTTATAGTAGGTTTTACTGTAGATTATGATTGCCTACCATAGCCTGTCCCTCTCACAGACATTTCATCTTTACCTACACGAAAGTGTAAACCTCCATACCCTAAAATAGTGAGCCGATTGCAGTTGAAGCTGCTGTTTGTGACACTGATGAAGTGAAAGAGTGGTGATGGAGACTAGAGGTGGAGTTGGAGGATGGAAAGGTAAGACATAATTCAACACATTAATTACTTGAAAAGACAGATAGTAAAGATATTTCAGGTGTGTTAATATCCAACATATTCTGACTGACCAGTGGACTAAACCaaatgtttgattgtttttttttctggtgagATCTTGGCATAGCCCCATAGACtataattgttatttttttacagtctatgcataGCCCTCTGTCAGATGGCTAAAACAAGCTACGACAAtgcactttttaaaaaatatgtccACATTATTTCAAATGTATGTAACAGTTTTTTAAGAGTTTAGATCTATTTTTTGTGCTAAGTAATAGGTACCCGATTGTCATTTTTGAGGGTATTTATGGAAGAAAGTCCTGCTGTGACCACAGACACTTGACTGAATGGAGTTACCTGTCATTTAACTGTAATATACTGGAGCGATAACACCACCTGTGGGTGTGAACTATAATGTGAACGAGATGGTTAGGTGACAtgcatactttttgtttttagttgtaCTGATCAGCTGTGTAAATGAAGTTTTTCTTACATTATACATTTCAAAAGAAATCaccaaaaacttaaaaattatACGTTGAGGTGTTTATATCGTTGTCTGAAGATATTTAATGCCAttttgagagagagatgggTGAAATGTTGTCCCAGACTAGTTTGTGAAATTGAATGAATTAAATTGGCAACAAAATGTAGATACACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36829 lncRNA downstream 2498 16028887 ~ 16029172 (-) True G27659
XR_005638713.1 lncRNA downstream 182971 15818610 ~ 15848699 (-) True LOC120555431
XR_005638712.1 lncRNA downstream 182971 15819463 ~ 15848699 (-) False LOC120555431
XR_005638714.1 lncRNA downstream 182971 15829888 ~ 15848699 (-) False LOC120555431
TU36736 lncRNA downstream 434803 15596613 ~ 15596867 (-) True G27594
TU36855 lncRNA upstream 3034 16071569 ~ 16073508 (-) False LOC120556162
TU36856 lncRNA upstream 6030 16074565 ~ 16074783 (-) False LOC120556162
TU36877 lncRNA upstream 98424 16166959 ~ 16168421 (-) True G27698
TU36904 lncRNA upstream 253428 16321963 ~ 16324191 (-) False LOC120555730
TU36909 lncRNA upstream 318361 16386896 ~ 16387172 (-) True G27725
XM_039794731.1 mRNA downstream 13958 15887011 ~ 16017712 (-) False myo9aa
XM_039794732.1 mRNA downstream 13958 15887011 ~ 16017712 (-) False myo9aa
XM_039794733.1 mRNA downstream 13958 15887011 ~ 16017712 (-) False myo9aa
XM_039794730.1 mRNA downstream 13958 15887011 ~ 16017712 (-) False myo9aa
XM_039794729.1 mRNA downstream 13958 15887011 ~ 16017712 (-) False myo9aa
XM_039795572.1 mRNA upstream 4335 16072870 ~ 16159882 (-) False LOC120556162
XM_039795571.1 mRNA upstream 4335 16072870 ~ 16159882 (-) True LOC120556162
XM_039795573.1 mRNA upstream 4335 16072870 ~ 16159881 (-) False LOC120556162
XM_039795566.1 mRNA upstream 99940 16168475 ~ 16254605 (-) True trip4
XM_039795567.1 mRNA upstream 192359 16260894 ~ 16294060 (-) True LOC120556157
XR_005638870.1 other downstream 391710 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 1187765 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1561325 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2742406 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2935904 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 1439588 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 1441415 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 1441593 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2149587 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 2314170 18382705 ~ 18383642 (-) True G28265

Expression Profile