RNA id: TCONS_00008422


Basic Information

Item Value
RNA id TCONS_00008422
length 726
lncRNA type sense_over
GC content 0.49
exon number 5
gene id XLOC_003679
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41459408 ~ 41475995 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGGTTGCATTGCAGACACGCACAGGTTATTAGACGCACGGTTATTATGGCCGGTAAAAGAGCGTTAGTGATTCTTGCGAAAGGAGCGGAGGAGATGGAGACTGTAATCCCGGTGGATGTGATGCGCAGAGCGGGGATCGCTGTTACTGTCGCAGGTCTGGCAGGTAAAGAGCCGGTTCAGTGCAGCCGTGAGGTCATGATCTGCCCAGACTCCAGCCTGGAGGACGCACACAAACAGGGTCCATATGACGTTGTTCTTCTGCCTGGAGGTTTGCTTGGAGCCCAGAACCTTTCTGAGGTACAAATCTGTTTTAATTATGCATGTTTTACAGTAGAGTGAGTTCCATAGGAGAGCTCTTACGCCATTCGAGTCTTACATAAGGTTATGAGTGTTCCTCAAATCAACAGAAAACATCTTTGAGTCATCTGCCGAGGTTAGAAACACGGTCGCATTGTGAAACGCAAACATTGCGCAATTATGTAAATTGAAGCAGTGTTGTGACAGTTGTTTCTGTAGTGCGTCATAtacatataagtgtgtgtgtgcatgtgtgtgttgtagtCTCCTGCTGTGAAAGAGGTGTTGAAGGACCAGGAGGGCAGGAAGGGTCTGATCGCTGCAATCTGTGCAGGCCCGACGGCACTGTTGGCTCATGGCATTGCATATGGCAGCACAGTTACTACTCATCCTGGTGCCAAGGACAAGATGATGGCTGGTGATCATT

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:1903427 negative regulation of reactive oxygen species biosynthetic process biological_process
GO:0006954 inflammatory response biological_process
GO:0070301 cellular response to hydrogen peroxide biological_process
GO:0006979 response to oxidative stress biological_process
GO:2000277 positive regulation of oxidative phosphorylation uncoupler activity biological_process
GO:0007338 single fertilization biological_process
GO:0106045 guanine deglycation, methylglyoxal removal biological_process
GO:0106046 guanine deglycation, glyoxal removal biological_process
GO:0042593 glucose homeostasis biological_process
GO:0006508 proteolysis biological_process
GO:0034599 cellular response to oxidative stress biological_process
GO:0006517 protein deglycosylation biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0050821 protein stabilization biological_process
GO:0030073 insulin secretion biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0036529 protein deglycation, glyoxal removal biological_process
GO:0006281 DNA repair biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0045121 membrane raft cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:1990422 glyoxalase (glycolic acid-forming) activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0036524 protein deglycase activity molecular_function

KEGG:

id description
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko04147 Exosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007142 lncRNA upstream 224758 41223485 ~ 41235090 (+) True XLOC_003677
TCONS_00007140 lncRNA upstream 258576 41192329 ~ 41201272 (+) False XLOC_003676
TCONS_00007141 lncRNA upstream 258576 41195394 ~ 41201272 (+) True XLOC_003676
TCONS_00008682 lncRNA upstream 503725 40948472 ~ 40956123 (+) False XLOC_003671
TCONS_00008681 lncRNA upstream 506968 40948472 ~ 40952880 (+) False XLOC_003671
TCONS_00008683 lncRNA downstream 459359 41933100 ~ 41934619 (+) True XLOC_003684
TCONS_00008423 lncRNA downstream 540262 42014003 ~ 42017313 (+) False XLOC_003687
TCONS_00008424 lncRNA downstream 540287 42014028 ~ 42018127 (+) True XLOC_003687
TCONS_00008684 lncRNA downstream 562046 42035787 ~ 42036989 (+) True XLOC_003688
TCONS_00008685 lncRNA downstream 568818 42042559 ~ 42069664 (+) False XLOC_003689
TCONS_00007143 mRNA upstream 86900 41242644 ~ 41372948 (+) False XLOC_003678
TCONS_00007146 mRNA upstream 95402 41243094 ~ 41364446 (+) False XLOC_003678
TCONS_00007145 mRNA upstream 151106 41243094 ~ 41308742 (+) False XLOC_003678
TCONS_00007144 mRNA upstream 173758 41243094 ~ 41286090 (+) False XLOC_003678
TCONS_00007147 mRNA upstream 173963 41243325 ~ 41285885 (+) True XLOC_003678
TCONS_00007150 mRNA downstream 67121 41540862 ~ 41699658 (+) False XLOC_003681
TCONS_00007151 mRNA downstream 87051 41560792 ~ 41699904 (+) True XLOC_003681
TCONS_00007152 mRNA downstream 364295 41838036 ~ 41850086 (+) True XLOC_003682
TCONS_00007153 mRNA downstream 385066 41858807 ~ 41929506 (+) True XLOC_003683
TCONS_00007154 mRNA downstream 462694 41936435 ~ 41960276 (+) True XLOC_003685
TCONS_00007137 other upstream 301920 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 301922 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 570554 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 803977 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007097 other upstream 2656110 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007172 other downstream 1151630 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 1571085 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 2551021 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 2851020 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 2851020 44324761 ~ 44334911 (+) False XLOC_003732

Expression Profile

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