RNA id: TCONS_00073554


Basic Information

Item Value
RNA id TCONS_00073554
length 796
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_037382
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 42269059 ~ 42270960 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTCTTTTGCGTGCAAGCTGTTGTAGAAAATGGAGAACATCGTGACCAACAAACCTAATCTCATCAAATGGCTTAGTTTGGATGCGACTCATTTATTGCAGCATGTTCAGTCAAAAGGGATAATAAAAACTGAGGAGTACAACGATCTGATGTCCCTGAGTTCTTCTAGGATAATAGTTATCCACCTTTTGGATTTACTCATTGGAAAGGGTGAAAGTACGTGTCGGTCATTTCTGGAGTTACTAAAAGAAGATGATGTAAATGAAAGTTTTCCTAAGCTGAGAGAGTGGATCATAACAGTGGACACTTCGGTGACTGCAGACATGAATGGAAGTCCAAGTCTCAAGGCATCAGGCACCCAAATAACATGCAACATCTCTGCATCCAAGGGCAGTCATGTATATGCACCTACCATAGCAGGTTCAAGTACAGGGCCCGTTGTAATTAATACAACAACGACTACACGTGGCGGATCAGACTACCAGAAAGATGAAAGAGACTGGGGAGGAGGAGAAACTGGTGACAGATCAATACAAGATTGTCAGAAATTTCTAAAAGCAAACATCAGTGCATTGGTTCAAAATGTGCAGATGATTGATCCAATTCTTGATGATCTTAACCTGCACAAAGAATCCACTGCAAATGTGAGAGCGAAGACAACCAATCAAGATAAGATGAGGAAGCTGCTTGATTGTGTGAATTGCGAAAGCATCGCTAAGAAGCTGGTCAAGGCTTTGCTCAAGCATGAAAAAGATCTAATGATGGAAATCATGCAAGGGGTGCCCGCTCGTTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-302 Predicted to act upstream of or within regulation of apoptotic process.

Ensembl:

ensembl_id ENSDART00000113435

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074932 lncRNA upstream 110443 42158376 ~ 42158616 (+) True XLOC_037381
TCONS_00075180 lncRNA upstream 160973 42102201 ~ 42108086 (+) True XLOC_037379
TCONS_00073541 lncRNA upstream 462704 41788217 ~ 41806355 (+) True XLOC_037375
TCONS_00073535 lncRNA upstream 670232 41509948 ~ 41598827 (+) True XLOC_037369
TCONS_00073534 lncRNA upstream 690057 41509948 ~ 41579002 (+) False XLOC_037369
TCONS_00075181 lncRNA downstream 78225 42348958 ~ 42500284 (+) False XLOC_037383
TCONS_00075182 lncRNA downstream 187366 42458099 ~ 42500284 (+) False XLOC_037383
TCONS_00075183 lncRNA downstream 187398 42458131 ~ 42500284 (+) False XLOC_037383
TCONS_00075184 lncRNA downstream 220692 42491425 ~ 42500284 (+) False XLOC_037383
TCONS_00075185 lncRNA downstream 226463 42497196 ~ 42500284 (+) True XLOC_037383
TCONS_00073553 mRNA upstream 104315 42157578 ~ 42164744 (+) True XLOC_037380
TCONS_00073548 mRNA upstream 141831 42066030 ~ 42127228 (+) False XLOC_037378
TCONS_00073551 mRNA upstream 142973 42095220 ~ 42126086 (+) False XLOC_037378
TCONS_00073547 mRNA upstream 143730 42063906 ~ 42125329 (+) False XLOC_037378
TCONS_00073550 mRNA upstream 143730 42095220 ~ 42125329 (+) False XLOC_037378
TCONS_00073556 mRNA downstream 275771 42546504 ~ 42650623 (+) False XLOC_037384
TCONS_00073557 mRNA downstream 335948 42606681 ~ 42650623 (+) False XLOC_037384
TCONS_00073558 mRNA downstream 336405 42607138 ~ 42649598 (+) False XLOC_037384
TCONS_00073559 mRNA downstream 336413 42607146 ~ 42650179 (+) True XLOC_037384
TCONS_00073562 mRNA downstream 1527169 43797902 ~ 43880326 (+) False XLOC_037388
TCONS_00073552 other upstream 143675 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 173882 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073545 other upstream 230740 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073540 other upstream 535449 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073538 other upstream 586049 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073560 other downstream 1060662 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073561 other downstream 1504518 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073566 other downstream 1584762 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073582 other downstream 2661442 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 2725536 44996269 ~ 44997423 (+) True XLOC_037398

Expression Profile

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