RNA id: XM_039795069.1


Basic Information

Item Value
RNA id XM_039795069.1
length 2228
RNA type mRNA
GC content 0.43
exon number 6
gene id rs1a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18721369 ~ 18728722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAATCCAGCCTCTCTATCACGGCTGGCTCGGTTGCTCAGTGTACAGTCGGTGTCGTCTGGTTTGGAGCAGGTTGGAAGATGGCTCTCTACGTGCAGCGTTTCCTGCCGGCCCTGCTTCTTCTGGGAGCTAACGTGTTCATCAGCACTCACGCTCAAGAGGAGGGAGTGTCTGAGGCGTGGACCAGCAGGTCTTGCAAATGTGATTGTGAAGGAGGAGAATCCCCGACCGAGTTTTCCTCCATTGGGACCGGCTCTTCCATGGTGCGAGGAGTGGACTGCATGCCAGAATGTCCGTATCACAAGCCTCTGGGCTTTGAGGCCGGATCGGTGAGTCCAGACCAGATCACCTGCTCCAACGAGGACCAGTACACCGGCTGGTTCTCCTCATGGCTCCCGGGCAAGGCCCGGCTCAACAGCCAGGGCTTCGGGTGTGCCTGGCTGTCTAAGTTCCAGGACAGCAATCAGTGGATGCAGATCGACCTGAGGGAAGTGATGGTGGTGTCGGGGATCCTCACTCAGGGCCGCTGTGACGCTGATGAGTGGATCACCAAGTACAGCGTTCAGTACCGCACAGACGAAAAACTCAGCTGGATCTATTACAAAGACCAGACTGGAAACAACAGGgtgttTTACGGAAACTCTGACCGCTCCTCGTCTGTGCAGAACCTCTTGCGGCCGCCCATCGTGGCGCGCTACATCCGCATCCTCCCCCTTGGATGGCACACACGCATCGCTCTGCgtctggagctgctgctctgcatgAGCAAATGCAGTTGAACCTTTCCTCCCCGCCATCCCAGAGGCCTTGTCCCAAAACCTTATCTACACCTAAATCACCCCATCGTCAAAGTGTGAGGTCTGTCATTGCATCCACAGATTTGGACCCCCTCCAGCTACATGTATTAAACCACAAGTTGAAGACAAAAACATTctgtttttaaaatacaaacaaaccaGTTTGACTTATGTGATttcattaaaaatatttatgtgaTGTGCTAAATGAGCTTCATTCACTGCACTCTCCATTGTCAATGTAAAACCATTCTCATACTGGGGGGTTTAATTTGGTGAGTTCTCAATAGATTGTTCCATTTGCAATGAAATGGCATAAATTCAAAGCAATaattagacagagagagagagagagagagagagagagagagagagagaggcagcgtTGCTATGGAGGTTGTATCCAATGGTCTGAGACAAGCTCTTCCAACACATTTGTGTCCTCCTGTTAAATTCTCCGTCTCCTGATATGTAACAGTATAAAACAGGGACCTCTTAGTCCGTCTTTCCTTATTTCCCTTAAAGTATAAGACTGGTGATGCAGTGATATTCTACATGTTTCttactgtcaacaaatcccataaaaagaccaaaaccaacaataaatTGATCCTACCAACAAGTATTGTTTGTGTGACCAAAGCCatatatgttatttttaatatatttatttttattactcccaaaaaatattaaaaacacatcaatgagccacacagTTGCATATATGTGACACATCTGTTCATTACAAAGAACAtaggcactgtagtttattttgagtcaataaCATACACATGATCCTGCTGCTCTAAATACTCAATGGTTCAATGTGAAGAAATGTGTATTAAAGCCCAGCacaaaatagtccccaacaaatgcactatttactcctgtttgagtaaatgttgctaaaaactacagtgcccagctgatTTAGAAAATCACTTAgcctttttaaaaagtatataATTGTGAccacctttaaaaaataaaataaaaatcatcttCAGTTTGAACAAATTGTTTTAGTTCTGACTAATGGTCTTAGTTCTGAGTGCCACAGACAGGATAGAGAAGCCAGAAAGTGTTGAGAAAATGACTAATGCGTTGTTGATTTTGGTATTTTCATGGGATTTTTTGATGACAAGAAAAATGTGGAATAATGCCAGactttttctttaaatacaCCTGTGATTTAACttcctgttttctctttttttttgtaaacatgcATCACTTTTACCGGTATCAATCTTCAGTGCTATATAAAGATCAAGGAATGGAAAATTCACTAATGTTCAGATGTGGATTTGTGTTGTGGTttactcctgtttttttctgtaacatTTCAATTCAGTTTCCCATGGTGCTTTGGGGATATTGTTAGATCTCTAAACTATTTCCTTGATTAAATGAATACTTGTGTCATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37505 lncRNA upstream 105560 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 111491 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 276073 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 540168 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 802173 17918900 ~ 17919196 (+) True G28083
XR_005638784.1 lncRNA downstream 117547 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 325402 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 328824 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 343098 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 354485 19083207 ~ 19087001 (+) True LOC120555697
XM_039795673.1 mRNA upstream 22871 18677341 ~ 18698498 (+) False phka2
XM_039795672.1 mRNA upstream 22871 18677356 ~ 18698498 (+) True phka2
XM_039795675.1 mRNA upstream 22871 18677356 ~ 18698498 (+) False phka2
XM_039795676.1 mRNA upstream 22871 18677356 ~ 18698498 (+) False phka2
XM_039795674.1 mRNA upstream 22872 18677356 ~ 18698497 (+) False phka2
XM_039795647.1 mRNA downstream 41660 18770382 ~ 18797783 (+) True scml2
XM_039795648.1 mRNA downstream 41660 18770382 ~ 18797783 (+) False scml2
XM_039795649.1 mRNA downstream 48282 18777004 ~ 18797783 (+) False scml2
XM_039796077.1 mRNA downstream 147230 18875952 ~ 18889502 (+) True ace2
XM_039794245.1 mRNA downstream 170725 18899447 ~ 18909277 (+) True zgc:113276
TU37478 other upstream 152889 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 978635 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3234948 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3274977 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5483550 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 758524 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 769016 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 769371 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 783634 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1982382 20711104 ~ 20761147 (+) True G28770

Expression Profile