RNA id: XM_039795081.1


Basic Information

Item Value
RNA id XM_039795081.1
length 7706
RNA type mRNA
GC content 0.45
exon number 28
gene id ano1a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5917556 ~ 6021420 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCGTGTCCTCTATGCTACCTGGCCAATACCTGCACTCATTCCTGTTTCCTGTCATTCCTACTTTCTAATCAGACGGATTTGTCTTTAACTCTGGAGAAAAGCGCGTGTGGCTGTGAAGCACGCGGAGGGATCGATGCTGTAAGCAGAGAGCGACGGCACAGTAGAGCTGGACCCGGAGCGCCTTTTTAGACCCGATGGAGGGACACGATGTTGGAAATGAGCTGGCTCGGAGCGTAAACCATCCTGATAGTGCCGAAGAGCCCGGTTCTTCTTCCCTAGCCTGTGAGCACTATGGCAGCCCGCAGCAGGAGGTGACTGCCACGATGAGGAGGAACGACAATTACCTGCCAGTCCCTGGCGAAGAGAAGAGCCTGGATGTGGACTTTGTCAACACCAAGGACACGAGCGACGAGTCCATACCAATGAAAAATCGTTATGCGGATGATGGCTCACCTCTGTATCCACGGCAAGGCCCTTACTTCTCTGATGGGCAGCGGCGGGTGGACTACGTGCTCACCTACCACATCCAGAAGCCCAACAGCATCCGGCGCCAGTCCTCCAGGTTTGGCGACAACAACTTCATCCGGCGGCTTTGGCGCAGCCTGAACATTAGAAGCCGAGGCGCTGAGGCGCAGCCAAAGGAAGACCCGGAGATCGCCGCCCAGGAGCAACGGACTGACTATCATGAGGATGACAAGCGCTTTAGGCGGGAGGAGTTTGAGGAAAACATCCGAGAGACGGGGCTGGAGCTGGAAATGGACGAAAGGACCAATATCCCTGGAATCGGCTTCATGAAGGTCCATGCTCCTTGGAACGTTCTGTGTCGGGAGGCTGAGTTTATGAAGCTCAAGATGCCAACAAAGAAGAGTTACGAAGTGAAACAAGGCAGTAATCTGGTGGAGAAGATCCGGCTGTTCATTCACAAAGTCACAGCTCCTCTCCACCCAGAAGTAGACCCCAACCGGCCACAAAGCGTCAAATTCCTCTCTCACCCTTTCTCCAGAGAGAAGCAGCATCTATTCGACCTGTCTGACAGGGACAAGTTCTTTGACAGCAAGACCAGGAGCTCAATAGTGTATGAGGTACTAAAGAGGACTAGATGCACCAGAGCCACATACTCCATGGCATATCGGCCATTCGGCAACTCATCGACTGATGGTTCAGTCAACCGTGGGATCACCAGTCTGCTAGCCAATGGTGTCTATACGTCTGCTTATCCTCTGCATGACGGAGACATCGAGGGGGCGAATGCAGAACCTAACGACAGGAAGCTGCTGTACGAGCAGTGGGCCAGCTACAGCTTCTTCTACAAGTACCAGCCTATTGGACTCATCAGGAAGTATTTTGGGGAGAAGGTTGGACTGTACTTTGCCTGGTTAGGAGTCTACACACAGATGCTGATCCCTGCAGCCATAGTTGGAGTCATTGTATTCCTCTACGGCTGCGCCACTGTCGACGATAACATACCAagTATGGAGATTTGTGATCCCAGGCACAACATCACCATGTGTCCGCTGTGCGATCGCGCCTGCAGCTACTGGAAGCTGGTGACAGCGTGTGGTACAGCCCGAGCCAGCCACCTGTTTGATAACCCAGCCACTGTCTTTTTCTCCATCTTCATGGCCCTCTGGGCGGTTCTATTCATGGAGCACTGGAAGAGACGACAGATGCGACTCAACTATATCTGGGACCTGACAGGCTTCGGAGAGGAGGAGCAGGAGGAGCATAAGGACCACAACCGAGCCGAGTACGAGTTCCGGGTCATGCGAAAGACAATAAGAAAGGAGAATCCAACCCTGAAGagagAGGAAAGTGAGAAGGTGAAAGTGAAGCTGACGTGTACAGACAGACTGCCAGCTTACCTGACTACTGTGGTGACGATGGTCTTCATGATCGTGGTGACGTTTGCCATAGTCTTCGGGGTCATCCTGTACCGGATTAGCATTAAAGCAGCGCTGCACATGAGCACCTACTCTGACCAGTCCAACATCAGAGCCACTGTCAAAGGCACGGCCGCCGTCATCAACCTCGTCGTCATCATCATCTTAGATGAAGTCTACGGCGCCATCGCCCGCTGGCTCACCACACTGGAGGTTCCAAAGACGGACAAGAGCTTTGAAGACCGCCTCATCTTCAAAACCTTTATCTTGAAGTTTGTCAATGCATTCACACCCATCGTCTACTTGGCCTTTTTCAGGGGcagGCTCGTTGGGCGGCCCGGAAACTACTTGTATGTTGTTGGATCGTACCGAATGGAAGAGtGTGCCCATGCAGGCTGCCTCATGGAGCTGTGCATCCAGCTGTGCATCACTATGCTTGGCaagcagctcattcagaacaaCCTGTTTGAGATTGGCATACCGAAGCTGAAGAAGCTGCTCCGGAGGAGGAAGTCTGACTTGGACTCCAAGCAAGAGGAGGAGCTGAACAGGTCTCTGCATCGCCACGAGAAAGACCACATCCTGGGTCCTTTCGTCGGCCTCAGCCCTGAGTACATGGAGATGATCATCCAGTTTGGGATGGTGACTCTGTTCGTGGCGTCCTTCCCTCTGGCTCCGCTCTTCGCTCTGCTCAACAACATCATCGAGATTCGCCTGGATGCCAAGAAGTTTGTTATGGAGCTGCGCAGGCCGATTGCAGCCAAAGCCAAAGACATCGGTATCTGGTACAACCTGTTGAGAGGCCTCAGCAAGGTAGCAGTCATCGTTAACGCCTTTGTCATCTCCTTCACCTCCGACTTCATCCCACGGCTGGTCTACCAGTACATGTTCAGCGTTGACGGTACCATGCACGGCTTCGTCAACCACACTCTGTCTTACTTCAACGTCAGTGAGTTCCAGCCAGGCACAGACCCTCTGCAGCCATTGCACCTGGGCTACAGTGTAGAAATATGCAGATATAAGGACTACAGAGAGCCTCCCTGGTCCAGCACACCATATGAACTCTCCAAGGAGTTCTGGGTCGTTCTGGCCGCTCGCCTCGCCTTCGTTGTCGTCTTTCAGAACGTGGTGATGCTTATGAGTGACTTTGTGGACTGGCTGATCCCAGACATCCCCAAGGACATCAGCCTCCAGATCCACAAGGAGAAGATCCTCATGGTGGAGCTGTTCATGAAGGAGGAGCAGGGCAAAAGGCTCGCAGCGCGGGACAACCACAACCAGGACAACTGCAACTCCCCCtcgtcagccaatcagagcccgCCGCGGCCCCGCTCACGGCCAGCCTCGCACGCCAACTGCTGTTAAACTGCTAGCTGCGAGAAAAAACTGTATACAACAAAAAGCACCTGTATACAAACTGTCCATAAGGGAATCAGCTGCATAAAGCTAGCTGTTAAAGGTTAGAAAGGTTTTAAGGCATGATCAGTTTTTAATAATCAGCAAAAGTGCTTTTGCTGCGTTAATGTTGTTTGGGAATATTTGAAGTCAAGAATGACTTGACAGTTAAAACCAAAACTCTGACGCTTTCACATCAGAATTGTTGTTTAcctgttttaaaaaatgttccCATGTTAAGATGAAGCATTTTACAGCAGGCCAGCCATTAACCAAAAATCCAGCAAGCAACACCCATAGGATGTATGATcacaaaacattatttattgGATGTACAGTACTGGATTTGAAGGGAACAAGCCATTAGCTTCACTTGACTCTGGGGAAATTCCTTGTCAATGACATCATCATTCAGGACGCCAAACCCCACCTGCAACCTAATTTGAATCCTATTTTCAAGCATCCAGTTCATACCTACCACGTCTCCCACGGGACCTGAATGCAGCGTTTGTATTGAAGACAGTGTCTGTCACAAGGGTCCTGCTGGGAAGACTTTCCTCCTGATGTCTTACTGGTGAGAACCTCCCACCTGCTCAGATAggcctttcttttcttttcttttcttttcttttcttttctttttttgcacaatTATTTACAAAAGCAGGAATTTATCGATGTACTTCTTTGAATATGCAACATGGTCAAGCACATGTGCTTTGTTTTTTGGAGATGAACAGCAAGGTTTTGTCCAGCGGCCTGTTGATTTGTACTATTCTTTTGTAAGAGCACCATTTTGctcatttttacatttgttaCTCACCGTGCTCAGTGGCATTAttcctaaaaataaataaataaataaagcacaaGTCACATTATTCATTCCAATGAACTGGAATTCTTAAAACTGCCACTGACAAAATTTACAGCAAAAATAACCCCAAAGTGATGTCATGCTGTAGATAGTTCCTGTACATGTCCTGTTAAACCTTATCAAACTCTGCTATTATAGTATAGAGAGTATAGATAAACATTTGCCAAATTTGCTATTACATCAAATCATTCTATTTTTTAAAGCTGTATTAaccaaattaattttatttgccacttgggggcagcagaccaagctgaaaaaaaacactgacataTTGTCGCcttaaaaacaattatttacacatccaacaCAGAGTAACGTTAGGATTCATTGTGAGTGTTTGTGGCCACCCAGTCCAGTTTTTACTGTCATTTTAGCTGAAGCAgctaatatatttttctcaggCTTTTTGATGAACATAGTTATAAGCTAAACTGATACCTTTATCGGTCTGCTCTGTGGTGTTGAGCAGATGCAGTGTGgagtgggtttatcagagaaaACCTGTACCTGCTGCCGGAAAACGAAGGCAGATGCAAAGAAGTTTGTGGgccgtaaaaccaaaacaatgagctgcaAGATGCTAAATGGCTCTGCAGGGCTAAAGGGAGCTGTTGAtaattatctctctctctctgtgggttTGGCACTACGAGCAAAGCCTTTTACACTACACTGTAATATCATCTATttttagtgtattttttttttaatgattagcTGCTATAATTAACATgactcaaaatgaatgctaatgctaCTCTGTGTCTGGTGGACTTGTAAATGCAACTGTTCGCTAACAAGTTCACCATCTCAACTTAGAAAGGGATGTCATGTCAGTCTTGTGTTTTCAGCTTGCGTCTGCTGCCCCACCGCGGCCACAAAATCCGTTCATGCAAGGTTAAATATCTGCAAGGAAGCTCTTTGTTCACAGGAAGAGAGTCCAGCATTCAATCTTTTGCCTCACTTGTTCATTTGGTGTCTTTTGGATCATGTACACTCCAGGGCAGAGTGCAGTTTACTGATGTCACCTTACAGAGTTTCTCCAGACCAAATTAATAATTCTTGACAGAATTCCTCATCTGTCATTTTTGACCCACCAATGGCAAATGTTGACTTATGCAGCTTTAAAGAGCCCAGAAGATGACAAGTAAATGTATTTATCTCACAGATTAAAAACATGAATGCCATTCACACCTTTGTCTATCGTTAGAGATGCTCAGCtgtgtttattaaataattaacGACAAGTGTGCTGATAGATTTAAGGTTGTGCACTAAAATTGGAATTTGAAGTCACACGTAGTCGTACAAGGAAGTGCATATATTACAGTGTGTGCCATCATGCTcataaaacatcagaaaactGCATCTTGGAACAAATGCAAAATCAATAGCAATGTGAGCTCTTTATTTAAAAGGacaatgcatttgttttttttactaaagtagGAACTTTCAGCTTCTCGATGACTCTGGAATGCAGCacgtgtcttgctcaagggcaccccAGTGTTGTTGAGCGAAGCAACAGCTTTACCGACTCCTACCCTGCCTTATATTCTCCCTAAACTATCGCTGGCTCATTTGAGATTTCCATTTAGCAGTTTTAAGGGGATACAGTGTATCAGTCGAACCAGAAAAGGATACACTGTTTCTATACTATTATCTTGCCTTATATTAACCTTATACATTCACTCTTTAACTAATCAAGCACAAATACTGaataatattttgttttctatttatcAAACTGCAAAAAACTTATGTGGGAGTGACTGGATACCACTTTGAAGAACGTAAATGTACGGTGGACTGAAATAAGGCTAACAAGTACAGTCTACACTCATCCATGTGTCAAGTCCTGCCCCCTGCTGTAAATATATTGAACTATCCCAAATTTAAAGGGGCTGTATTCgatattcagaacattaatatagctgCAAACAACTATTTGTAATGTAAAGTAATGGCagcctgagcagagaatgaagtcacactcgGCGTGTGTTGTGATCCGAGCTTCTCTGTTTTGATTGCAGGTCAGGCTGCGCGTGCTGTTAGTTACTTGCATAGACATGAAAAGAATAGACGTAGCATCAGTGACGTCACccgttggtttgtggactgtGTTTTTGAAGCCTTGAATTTGTCGATATGGGCATCGCTGtcttgtttatggttgcaatggcgATGCGTGAAGCTAAACGCAAGTTGAGGATTTCCAATCTTTCTGAACCAAGTCATCCAGCTGACCTGCTGGTAGTCTATATCGTCGACATTTCCCTCCTGGGACAGTTCCGGTGCCGCCAGAATTTCCAccggattggtttaaagaaatgccaataaaccagagcatatttttctcccatcctggaatgttgTGCGGACTAGACCTTCCTCCTCAGCGCTGTGgatgaaggtctggcaatgcgagaataACCTGCTGGTAAACGCGGACCTCTGGGTACTGcagccattcatctgcatgtacagtattttcccatagacttctatagaaacatatttttttgcaaccagtggagtctccccctgctggaaatgagatagaaTGCGAGTTCAAGGCACTTTAACATTGGCTTCACATTTCAGACCCAGAAGCTCCGTCCATTATTTTAACAGTCTATGACTCCTTGTTTGTCGATATCAGCCGTCGAGGGCCATGGCAAAGCGTTGGTACTTAACGGGTGGTCCgtgagagctgtgtggaggcaatcccagacCACTTCATTTTCTGAATATCCACTACCGCCCCTTTAAGCCCTCAACCCAGACTAATAGAATgtattataaaatgttttcttgtagtttaaaatgttataaatctcctctttttttatttcataacaGTGCAATTCTAAGTGCATTTAATGTATTGAAAGGGAATTATCAGCCCACAGGGGACCACTGATCTGTCAATGAGAGACTTTCACACTAACAGTGATATACTTTATTTTAGTGTCTTATTTTAGAATCCATGATTTAAAATTCTAGAAACCATCAATATGGACCTATGTCGCTGTATCTGAAAAGATGCCTGGGAAAACCTCTTCCGATACAGACTACAAAGACATTTGATCGCAACAGACGTTACTGTTTTTTGGGATATGACTTGGTCTTTTGAGCAAAGACTGCACATTTTATTTCTAGCTAATCTTAATATTATTACTACTCTGTATGTAAGTAGGGTTAGTGTTGATATTCAGTGATAGATTAGGCCCTACATGCTGCCACAGGGCTGTGTGGAGCCTGTGACAGCTATAATATTTCCTTCCTCTGAATCTCCTATAACCTGATGTCACATGTTCCCCTCCTTCCTGAGATGTCCTCCTGCCTGACTGTTGCCATGTTGTATTTACAGCATCAATAAGCACGTTGTGACATGCTTATATCTATTATAATGTATGTCAAAGCACATTTCACAACATGCAGGAGTGCAAATGCATGTATAACCTATTTGTCTGTCTCTGATAATCTCTgagtctttttttgtgtttaaactTAGTGTAAATAAATGAGAGATGAACTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34435 lncRNA upstream 5120 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 24548 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 54706 5862659 ~ 5862867 (+) True G25663
TU34365 lncRNA upstream 241585 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 284543 5630664 ~ 5633030 (+) True G25593
TU34492 lncRNA downstream 14036 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 15439 6036859 ~ 6037969 (+) True G25710
TU34500 lncRNA downstream 257281 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 369179 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 406638 6428058 ~ 6428260 (+) True G25797
XM_039795538.1 mRNA upstream 33550 5869055 ~ 5884023 (+) True zgc:153993
XM_039795269.1 mRNA upstream 63084 5816034 ~ 5854489 (+) True LOC120555999
XM_039796037.1 mRNA upstream 112751 5764543 ~ 5804822 (+) True LOC120556427
XM_039796036.1 mRNA upstream 159324 5733290 ~ 5758249 (+) True LOC120556426
XM_039794570.1 mRNA upstream 245550 5663719 ~ 5672023 (+) True LOC120555666
XM_039794097.1 mRNA downstream 5015 6026435 ~ 6032154 (+) True fadd
XM_039794284.1 mRNA downstream 240990 6262410 ~ 6266708 (+) False LOC120555541
XM_039795724.1 mRNA downstream 273677 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 361150 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 361151 6382571 ~ 6394802 (+) False rwdd3
TU34243 other upstream 1341928 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2132031 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3834254 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 4074762 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 12789 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 30467 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 31395 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 243554 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 265628 6287048 ~ 6288077 (+) True G25743

Expression Profile