RNA id: XM_039795092.1


Basic Information

Item Value
RNA id XM_039795092.1
length 3031
RNA type mRNA
GC content 0.45
exon number 13
gene id shcbp1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10789845 ~ 10840149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGCAAGAAGCACGGGAAAACTCGTCTGCAGGAACGAGAAAAACTGGGGACGAGATGACAGACATGGTGGTTGATTTGGAGTCCTACGTTAAGGTTGAACTCGacatggaaaagaaaagaatagaaGTGGGGCGTAATGTGTCCGGTATAACTCAAGctctgtttcagaatgaagaggaggatgaagatgagagtgataatgatgatgaagatAGTGGCACAGACCATTTTAACTCTGAAAATTCAGGGACTAGGCTGCAAAGATGTGAGCGCCATGGAGCTGTGAATTCAAGTCTTCCTGACACCTTCCAGACCAGCCACCTGCTGTTCTATGAGAGATTCAAGGCGTACCAGGACTACATGCTCGgAGACTGTAAGCCATCTGAGGTAAAGGCCTTCACAGCAGACTACCTGGAAAAGGTGGTGGAACCGTGTGATTGGTTGGCTCTGTGGTCTACTAACGTCTTTGATGTCCTGGTGGAGGTGTGTGATGTGGACTTGAAGGATCTGAAGGCTTCTgtgaggctggtgctgcctttGCAGTGTGACACCAGAGGCTGTGAACTCACTGAGGAGGCCATGAAGTCTCTGCTGGAGGCCACTGAGCACAAAGTCCCTCTAAAGGAGCTCCAAGTGGTCTATGAGCAGTCTGGGGACTTTGATCAGACCGCCCTCGCTCTTGAGCACCTCAGGTTTTTCTATAAACACATCTGGAGGCAGTGGGATgaggaagatgaagatgatgacTTTGACTACTTTGTTCGTTGTGTGGAGCCTCGTCTCAGGCTCTACTACGACATCTTAGAAGACAGAGTCCCAGCAGGCCTGGTGGCAGAGTACCAGTCCTTACTGGAAAACTGCTTTCAGTGCTTCCAGCAGTTCTCTGTGTTGCGCAGTGGCCTCAGCACTGACTCAGACTCAGAGCTGGACAATGTATCCATGGTGGAGGGCCTGAAGCTCTACGACCAGCTGGAGACGTTCAAACGCAAGCTTCACATTATTGAGAACCCCCTGTTGAGGTATGTGCTGGGCTACAGAGGCAATGCCAGGCAACAGTGTGTGCAGAGCCGTGGACTCAGAGCATCAGGTATAAAGGTGGTCCATGTGGTCACAGCCTCCTGCAGCACTATCCAGCTCCAGTCCCTCCTTTGTGACAGACTGCTGCCACTGTGTTCCTCTGAGGACACAGAGATTCAGTTCCATAAAGACCCAGTGTCAGCGGTGGAAACATGCCATCAGGGTGACATGGTCATTGTTCTCCCAGGGATCTATAGTGTCAGCAGCTCCATATTCCTACCAGACTCCATCACTGTAGAAGGCTTCGGGCTTCCTGATGAGGTGGTGattgagaagaaaaacaaggGCGACTCATTTGTGGAGTCCACTGGAGCTGATGTCAGACTTTCTAACATCAAGTTTATCCAACACGATGCTATTGAGGGCATTCTGTGTGTGCGTCAGGGGACTCTGAACATGGAGAACTGTGTGCTGCAGTGTGAGACCACGGGGGTGATTGTACGAACATCAGCCCGTCTCACCATGAACATGTGTGACCTGTATGGCTCTAAGGGGGCTGGTGTGGAGATTTACCCCGGCAGTGTTTGCAGTCTGGTTGGTAACGGTATCCATCACTGTAAGGACGGTGTTCTCATCAAGGACTTTGCTGATGAGCTTGATGTGATGCCGTTAATCACCATGGAGAACAATGTGATCCACAACAATGAAGGCTATGGGGTGATTCTAGTGAAACCCAACAATGGGGAACAACATGGAGTTCCTCTGGACACAAGTGAAGAAAACCATACTGAACCAACCACAGAGAACAACAGCACAGGTGGTGACGCAGCCTCAACCTCAAGCAGAAAGTGGCAGTTTAGTCGTCAGCTGAGCAAAAACAAGGAGACGTCCTGCAGCCGAGCTGTCCAGGACCTGATGGACCACCAGATCTTCGTCTCCATTCAGGGAAACCAGTTCAGACGCAATGGGATGGGAGATTTAGGCACCTTTTTCTACTGACAAATAACTTCAACACTCTGAACTTTTCTATTGACAAAATGTCAGGCTGGACGTCAATACACGTCGGCAATCAGAACTAGCATGCGTCTTTTAAGATCTTCACCAGAGTTTATTTAATGGACAGTTTTTAGATGATTGCCTTTGTTTGGCAATATATACAATTAGCTAATTCACACCCATCCATTGTGTTCTGCAGAGACAATAATGTTCCTGTGTATCAAGTGTGTTGTGATCCATTACAAGCTGTGTGTTTCTAAAGCACTCTGGCTTCTGCCTGTTTGATGGTAAATTGATCCCCACGTTTGCACCAATGcttttatcttatttatttcttcGGGCATCTGACgctaaatgtttttaatttttttttaatgcataatTTGTTTGAAATCCACTTTAGTCACGTTTAATGCAGTTTTGGTAGTTCCACTtcaaatgtaataaatgtaaccTTTTAAGGTAGTGAACGCAGTACGCAGTTAATTATAGATTTCACACAAATAttcattgttttctttgtttattaGTTAGATGTGATTTTCACGTGGTGCCTCTGTGTTTTATGGTTGAGGGAAGTCTTCAGGTTGACGGGCTCTAACAGTAGAAGCCCGGTGAAAATaatagagctgcaacaattagAAACGTATccaattattttgataatgaTTCATcgtttttagtatttttttatgcaaaaatGGCACACAAAAAATGCTGTGGTCAGCCTCTCGAATATGGCAATttcttgcttttctttgttttatgtcatattacactaAATATCTTGGGTTTTGGATAAAACAAAGACATTAAGAGTTATCACCTTATACTGAGGAACTGGGATggacatttttctttattttttagatCATCGATTAGCCTAAAAAATAAACTGATGTTTGATATTTAGATTGACTGATGATCCAAATGAGTCTTTGGTTTAAACTGCTACTTGTGGAAATTGTGAATATAATGAAAGTCCTGCAGATTAAAAAGTGTCTGTTGAAACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35560 lncRNA upstream 18071 10770959 ~ 10771999 (+) True G26605
XR_005638795.1 lncRNA upstream 129495 10659569 ~ 10660575 (+) True LOC120556100
TU35470 lncRNA upstream 310709 10479022 ~ 10479361 (+) True G26530
TU35466 lncRNA upstream 334458 10455401 ~ 10455612 (+) True G26526
TU35450 lncRNA upstream 404429 10385230 ~ 10385641 (+) True G26512
TU35603 lncRNA downstream 38793 10878942 ~ 10879304 (+) True G26634
TU35605 lncRNA downstream 60479 10900628 ~ 10900858 (+) True G26636
TU35609 lncRNA downstream 75563 10915712 ~ 10916142 (+) True G26639
TU35682 lncRNA downstream 336725 11176874 ~ 11177288 (+) True G26711
TU35683 lncRNA downstream 337524 11177673 ~ 11179253 (+) True G26712
XM_039795169.1 mRNA upstream 44744 10741710 ~ 10745326 (+) True LOC120555949
XM_039795168.1 mRNA upstream 180989 10527838 ~ 10609081 (+) True LOC120555948
XM_039795167.1 mRNA upstream 304759 10484463 ~ 10485311 (+) True LOC120555947
XM_039795154.1 mRNA upstream 324516 10425163 ~ 10465554 (+) True LOC120555943
XM_039794702.1 mRNA upstream 693431 9899924 ~ 10096639 (+) False lrrk1
XM_039794949.1 mRNA downstream 94484 10934633 ~ 11138398 (+) True minar1
XM_039794950.1 mRNA downstream 94484 10934633 ~ 11138398 (+) False minar1
XM_039794951.1 mRNA downstream 94484 10934633 ~ 11137689 (+) False minar1
XM_039794952.1 mRNA downstream 94484 10934633 ~ 11121115 (+) False minar1
XM_039794953.1 mRNA downstream 94484 10934633 ~ 10975970 (+) False minar1
TU35313 other upstream 930070 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 1185634 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1634727 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2029769 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4500294 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1191472 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2269608 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2395086 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 4601328 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 4635015 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile