RNA id: XM_039795096.1


Basic Information

Item Value
RNA id XM_039795096.1
length 2526
RNA type mRNA
GC content 0.45
exon number 4
gene id tssc4
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10766173 ~ 10789770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTAAAGCAgatacagaagaagaagaagaagaagaagaagaagaagaggaagaagaggaagaggaagaggaagaggaagaggaagagttTGGTTGTGGAAAGCAAGAACAGTGAGGCAAACTGTGATTGATCAACAACAGTGAGTCTGCAGACCAACAAAGACAACATGGAcgctacaacagcagcacaaacatgaaggagaaccaggaaatgagtagggggaaatgcaactctaccaagccacggccgagcatCGCCgcaacgtgtagttacatttttcatcaGGTTATTGATTTAGCCGACCTGCTGATTCTTGTTAAGATGTGTGATCAGAAAAATTGTGGTGACCAAGGTGAGATGTTAAACACTGATGATGTGGACGAGCTGTCGGCCAGTGATGAATCTGAGCCTGAAGAACGACCAAGCATTGCTCCCTTTGACCCAGAGCTgaacgatgatgatgatgatgatgatgatgatgatgattatcgTGGAGAGGTTGAGATCTCTGCTCTAGCTGGACACCGAGCTCAGAGTTCCTTCAGTCTGAGAGGAGGGAGCTCAGCTTTCTCAACCCGTAGCCACAACATCTTTGAATGCCTGGACAGCGTTGCCCGGCCAACCACCTCCTCTCTGAGCCACGATAACGTTACTGACGGAGTATTTGCTCGGCCTCTGCCTCCACATCCCAGCAGAAAGACAAGTCAGCCTCTGGCCAACTGCCCCACACCAGCAAAGAAAAAAGGAGTTCCGGACTACCTGGTGCACCCTGAGCGCTGGACCCGCTACAGTCTGGAAGAAGTGACAATGACCTGCGACAAGGGCAACAGAAGGGTAGCTCACAACTTCCTCTCTAGTCTGCAGCAGAGGAAAGAGCTGCAGGAGAGTGGGAGTGATTCCTCCTGTGACATCCAGCAGAAGATTATCTTCTCCAGACCCAGCGGGCTGCTGATTGAACAACCTGCTGAACAGCTGTCAGCTGTTGGAGGCAAAGAGGAGACACACCTTAGTCATCTGGAGGAGGATGACGAGGATGAAGAGGGCATGGAGAAAGCCAGAAACCAGAGTGTAGAAAAAGCTGAGGAAAGGGCAAGAGATGAAGAAAAAGACATGAGGGGAGTTTTGGATCGACCAGAGGAGAAGAAACCggtgcaaaaacaaaaagaggaggaagaggccaACCCCGCCTTTACCTCCTTCAGGAAGACCAAGCGTAACAACTACAGGAAAAGCTCAGGGCGAGATGATAACTAACCACGACACAGCTCTTTGCTGCCTCATCACTTTGTCAAAATAGTACAAACCGCATATGTAAAAAACATGTTAAGTAAAAAACATTGTTGTCCATTTAAATGTGCTGACTTTACTGTACTCAGTCCAAAGCCGAGCACAGCGCAAGCGGGAGGATTTTGGATTGAGCCCAGAGCAGATTTTTCAAATGTTGGAGTGTCTCCTTATCACCCACTCCATCCCGCTCCAATTTTGCTGCAGTACTGCTCACACCACGAGTTCGAAGCATCCCCAAGCCCGTCTTCGTGTTACTGCAGCATATGCAGATGAACGGTGCCCGTCCGCCCTCCCTCCAAATGCCGCCAGTGCCTGTCATACGGTGGACTTTTTGCTGGAGGAGCTCCAGGCATTAAGGGAAGGTGGGCTCCGTTCATCTAATAAATACAATGcagcttttttccttttttggagCGAGTGGTTGAGCGATTTGAGTAAAGCGAGGTGAAATCTGAGTGGAGCGCAGAGCAATACTGAGCAAAGTGGCCGGGAGCGGCTTTGAGCGAGGAGTGGAAATTCTCACTGCTCCAATGATGCTCTATACTCAACCAAACCTCAAACTGATGAAGAGCAATTAAACAGCAGGCTCAGATGCAGTGTTTTGCTGACCCCTGTCCCACACCTAACTTCACCGATGGTTATGATTGGAAATGTGTTCTGCTGCACCTGTAACAACACCAAATAATGAACTATAGAATAAACTGTTAGTTTATCTGTTCTTTTGTTAGCATGCAAGCTAACTAGCTTACCCCACTGTGAAGTAAGCTAGTTTTCATTTCAGGTGGCAACATCAACAGCTAAAAGTCAGCTAAAAGTGAGAAGCTGCTTCTGGAACATCTAAGACCCGTTGTTTGAAAATGACTGAATTGTGATGGTAAATCTGCtgcttttattgtattgtaaatGTGTTGATTGACAGTCTAGTAACAATAACTAAGGGGTAGCAAGGCTGAGTAATTCCAAATCAGCCTGAAAGACAAACGTGAAAAcactttcttttaaaaataaataaaagaatcaACATGAGGGCAGGAGTGTTAAGTCCTGTTTACACTCAAGGAATCTAGAAGTTTCTTTGTTTACACTCAGCTGGTCAAACTGAGGAGGGAAATTAGAACTAGTGTAGACATTTAAAGCTGGTCTTTATCCAGAtttgatttacattttttgtagcATGTTATGTATTTTGGTATTTCTCAATTCtcaatcttaaataaaaatattgatttgtattattta

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35535 lncRNA downstream 31235 10734726 ~ 10734938 (-) True G26585
TU35534 lncRNA downstream 32310 10733351 ~ 10733863 (-) True G26584
TU35496 lncRNA downstream 146312 10619661 ~ 10619861 (-) True G26551
TU35495 lncRNA downstream 146532 10619430 ~ 10619641 (-) True G26550
TU35465 lncRNA downstream 347357 10418470 ~ 10418816 (-) True G26525
XR_005638809.1 lncRNA upstream 71283 10861053 ~ 10867598 (-) True LOC120556132
TU35602 lncRNA upstream 88226 10877996 ~ 10878332 (-) True G26633
TU35604 lncRNA upstream 89211 10878981 ~ 10879313 (-) True G26635
XR_005638760.1 lncRNA upstream 165966 10955736 ~ 10956607 (-) True LOC120555827
TU35645 lncRNA upstream 216403 11006173 ~ 11006595 (-) True G26675
XM_039794260.1 mRNA downstream 16007 10745861 ~ 10750166 (-) True LOC120555515
XM_039795490.1 mRNA downstream 34272 10640938 ~ 10731901 (-) False ano9b
XM_039795489.1 mRNA downstream 34272 10640938 ~ 10731901 (-) True ano9b
XM_039795220.1 mRNA downstream 473249 10259231 ~ 10292924 (-) True snrpa1
XM_039796025.1 mRNA downstream 520787 10244124 ~ 10245386 (-) True zgc:113274
XM_039794209.1 mRNA upstream 417770 11207540 ~ 11220942 (-) True LOC120555500
XM_039795299.1 mRNA upstream 455982 11245752 ~ 11291530 (-) True LOC120556010
XM_039794601.1 mRNA upstream 593730 11383500 ~ 11384371 (-) True LOC120555675
XM_039794604.1 mRNA upstream 597907 11387677 ~ 11463360 (-) False celf1
XM_039794616.1 mRNA upstream 601268 11391038 ~ 11463360 (-) False celf1
TU35186 other downstream 1469427 9295068 ~ 9296746 (-) True G26298
TU35108 other downstream 1787097 8852787 ~ 8979076 (-) False LOC120555589
TU34939 other downstream 2619272 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 3421417 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 4121567 6642446 ~ 6644606 (-) False dok4
XR_005638773.1 other upstream 686994 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 853461 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 853801 11643571 ~ 11669269 (-) False LOC120555651
TU35894 other upstream 1170931 11960701 ~ 11961772 (-) True G26891
TU35932 other upstream 1514769 12304539 ~ 12304824 (-) True G26924

Expression Profile