RNA id: XM_039795101.1


Basic Information

Item Value
RNA id XM_039795101.1
length 3907
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC120555911
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4163676 ~ 4254074 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGTCACAGTCTTTCCTGGCTGACCACCGAGGACCACTCTTCCTGTGAAGTGTTGGGCGTTACACCCAACACTGACAGACACCTGAACATGAGCCAGGTGCTCCAGCTCGGCGGTGTGAACGAGGACATCCCCTACATCTACCCTCAGCTTCAGCACAAACACTTCACCGGCTGCATCCGCAACCTCATCGTGGACAGCAAGCTGTATGATCTGGGCTCCCCGGCCGACTCGCAGTCCAGCTCTCCAGGCTGCCTGACCACCGATAGCAGCTGTGTCAACATGGGCTATCCGTCCTGTGGCCACCGGGGTCGCTGTCACGGAGAGTGGGGCTCCTTTAGCTGCCAGTGTGTTCCGGGATACACGGGACACCAGTGTGAAGAGGAGGTCCCAGAGTATTCCTTTGAAGGACACAGTCATGCGCACTTCCAGCTGGCGTCCCCTCTGCCGGCCCGGAGGACATGGGTTCAAGCCCTGGTTCGAACCCGCAAACACAGCAGCATCATCCTAAACCTGATCTCGAAGGAGCAGAGTGAATACCTACGGCTAGAGATCTTCCAGGGCCTCCTCTGCGTTTTCTACAACCTCGGGGATGGGGACTACAACCTAACCCTACCCACCTATCGCCTCGACAATGGTGAATGGCATGAGGTCTTCCTGGATCGGCATGACAACGAGATGATGCTGCGACTGGACGGTGGCGGAGGCCAGCGGGAGATCACAGGGTCACGAGGCCGAAGCCGAGAAATCATCATCGACCCCACAGTGGTGATGCTGGGGAACACCTTCCCCTCTGGAACCAACAAGAGCTTCCAGGGCTGCATGAGGGACATACGCCTCAATGGTCGCTACATGCCACTGGACAGCCAGCCGCGAGATGGGGTTTCCCGCGTCAGCATACAAGGCCTCTCCCTTGGGTGCTCATCTGATTCCTGCAAAAGGAACCAATGTAGTCCCCCCTTCACCTGTGTTGACCTGTGGAGAGTGCACGAATGCagATGTCCTCCTGGCCACATGATCCGTGTGAACGGGACCAGAAAGTCCTGTGTCTACACCCTCTGTGCTACGCGGCCTTGCCACCGGGGGACCTGTGTGGCCCAGTCACCCTCCAAATTCACCTGCCACTGCCCAGAGGGTTACAGAGGACACCACTGTGAGACAACATTGGCCATCTATCGGGAGGACGTGGGCCTGAGCTTCAGCTCCCTCTTTGCCATCTGTATCTGCTTCATGGCCTTACTAGtgctgctgctgggcATTTTCCTCTACACTCGCTGGAGGAGCTACAAAGGGCTGAAAGAAGGCGTTTACCACGTCTCCGCCCACCACGACGGCTGGGAGGACATCCGAGAGAACGTCCTCAACTATGACGAGGAGGGGGGCGGGGAGGAGGACCAGaatGCCTACGACATGGCGGAGCTGCAGAAGTCCCTCCAGCCGAGCCCGGCCCAGTCGGTCCAGTACTGCCGCTCCAGGGCCCTGCACCaccacccccctcctccccccctccaccaccaccaccacctcctccaccaGGCGCCCCCGGCCCCGCCCTCTGCCCAGCAGCTGGACCCCCTCAGCCGGACAGCCAGCTCCAGCACCCTGCCCCCGTCGGCAGCTTCCACCTCCTCCACGGCCACCACCACCGCCAGCCTCCGCCGGGACGTCCCCCCCACCAGGCTGCcggcccagggccaggcccgCCCCTCCCAGCTGGCGCGCCGCTCCCTGTCCTTCTCCAGCCAGGACCTGGCCCGCTACCTGTGCGAGATCATCCGCGACGCCGACCAGCACCCGGACACGGGGCCCTTCGACTCGCTGCAGGTCTTCTCCACCGAGGGAGGGGGCTCGCCCGCCGGCTCCCTCAGCTCCTTCAGCTCGGCGGGGCTGGACGCGGGGAACGGCGGGGacgggggaggaggggagggcaGGAGGGAGGAGACGCTCGGGGAGTGGGGCCCCCGCTTTGAGAAGCTGCGGGCGCTGTACGAGCAAGCCGAGGCCAGCGACCTCTGAGCTCGGAGCGCAAActgacaggacaggacaggacccCGATAACGGGCCGTCCCAAACACAATCAATTAGCAGACGCTTAGCGACGGCtgaggtgggggtggggggggaaccTGCGAGAGACTGACTGACAGAGAGATCGCTCCACACCCCCCACTCGCCGACAACTGTCGTGGGAGTCGTAGGCCCGTGTGTTGTATTTACTGGATGATGAGccgccccccgccccccccccgccccccccgtCAGTCACCGTGGCGGCCTCACAGACAGATGAAAGTGTCCCCGTGAAAAGAGCCCGTCACTCTGCGCCCCCGCTACCTTGGAGGAAAATGTATTTTCGCGGGAGCAGACATTATCAGACGTGCCAGTCAGGTTCTGTAGCCGGGCTACTCATCATGATGGAGCTTAAGCTTCACTGTCAGGAAGATCTGTTCCAGTCGCAGCCACTaaacccacccccccaccccacaacacacacacacacacacacacaatttcctCTATTTTATAACACTCATTGCGAGCTGCTATGGATGAGTGTCAGCTGAAGGCCTCAAATATGAAATGGAAATGTTTTGGCCgggttctttcttttttttccataccCGAGCAGAGCGTTGCCACGTTAAATGTATTTTAGCACCTTGCCGCTGAATGAAATCTTCGTGAATGAACAAAGGACTCTTACACATACTGTGCTCTGCGCCGTTTTACGGGGATGCGACGGTGAAGATGAATGGGATCATACTGAGTAGCCCATTCAATACGCAGTTTGGATTTTGACTCTAAAGTGGACACGTTGTGTTCTCGCTGCCTGGCTGTACACAGCTTCTATCAATGTTTgtaaaggagaaagaaaaaaaaatactaagtGCTTGGACCAGCACTGGGTTGCAGGGTGAGATTCTAATTCTTTTCTTCTGGTAATGTGTCCTTCACTGGGTTGAGTAATTACGTATTGGTTGGGTGTTTTCAAGTTTCAGTGCTCCGTGGGTTGTAAGACGTCGAGCTTTCTAGTTCCTGCTGTGCCCTCATCTTCACGCGATTTTTCCTATTCTCATTTGCGCTCCTCCGCCGCCGCGCGTCTCTCCTCCTCACCCGAGGGACGGCGCGCAGAAATCCAAACAGCTTTGTTGCAAAGAAGTGGGAGCGGACGTGCGAACTGCGGGAGGGGGGAAATGCTTGCTCTGTTGCTCTGTTCCGCGTAACGCTGTTCCTCAGGCATACCAAATGTGGCGGGCTGCAGGAGACTATTTTAACTGACGATTGCACGGTAGAATACAAACAGCTTTCCAAGGTGACCGCTCAATAAATACAActggaaagaggaaaaggaggacaTTCACACTGATAATTCATGTATATATAATTATTCGGAGCTGTTATAGGTATACGCAATTCTCACACAGATAACTATTGTCCCTCGCTAAATTACCACATACTGTTGATTGTAGGAAAGTGGACTCAGTCTGCAGGGAAATAATAAGTCTGCAGTCATTTTCCCAGCTGTGAATTGTCAGCACAGTGGCAAGTGTTCCTCTTGTTTGGCTTCCTTTTCACATCAGGTTGATGGATCTTTTCAACttgacacaaaaaaacagacttCCTGCTGTTGTGGAACGGGCGAGAACAATTTGTggtaacagaaaaataaaaaataaaaaacgaagGCAAGGAAAAGGCCAATATAAAACAGTGAAAAGTGGAGAGGAGCGCCGAGTCTGAAAAGGAACCTTCGATAAGAGAGATGATCACAGGGTAGAGGGCTGAATCAGAGAGCAAATGAGCAAGGGAGGCAGAGAGGAACCATCTTCAGATGCCTGGCTGAGGAGTGTGGTGAAATGTGCCAGCAGTGCACCATGGGGCCGCTGTAGAGGGGGactatgtggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34149 lncRNA upstream 347528 3815837 ~ 3816148 (+) True G25436
TU34124 lncRNA upstream 549160 3614246 ~ 3614516 (+) True G25418
TU34089 lncRNA upstream 679452 3481321 ~ 3484224 (+) False mmp15b
TU34083 lncRNA upstream 700153 3463057 ~ 3463523 (+) True G25380
XR_005638720.1 lncRNA upstream 749141 3413012 ~ 3414535 (+) True LOC120555487
TU34212 lncRNA downstream 91564 4345638 ~ 4348769 (+) True G25486
TU34213 lncRNA downstream 91678 4345752 ~ 4348769 (+) False G25486
TU34229 lncRNA downstream 192521 4446595 ~ 4446914 (+) True G25498
TU34276 lncRNA downstream 428050 4682124 ~ 4682470 (+) True G25541
TU34285 lncRNA downstream 582537 4836611 ~ 4837267 (+) False tshz3b
XM_039795609.1 mRNA upstream 11612 3873032 ~ 4152064 (+) True LOC120556182
XM_039794599.1 mRNA upstream 439533 3623634 ~ 3724143 (+) False mtss1lb
XM_039794111.1 mRNA downstream 78991 4333065 ~ 4341288 (+) True LOC120555425
XM_039795582.1 mRNA downstream 539741 4793815 ~ 4837285 (+) True tshz3b
XM_039795585.1 mRNA downstream 539741 4793815 ~ 4837285 (+) False tshz3b
XM_039795583.1 mRNA downstream 540284 4794358 ~ 4837285 (+) False tshz3b
XM_039795586.1 mRNA downstream 540284 4794358 ~ 4837285 (+) False tshz3b
TU34144 other upstream 378134 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 2080357 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 2320865 1839333 ~ 1842811 (+) True G25173
TU34243 other downstream 316299 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 1780135 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 1797813 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 1798741 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 2010900 6264974 ~ 6266708 (+) True LOC120555541

Expression Profile