RNA id: XM_039795102.1


Basic Information

Item Value
RNA id XM_039795102.1
length 3538
RNA type mRNA
GC content 0.48
exon number 9
gene id tmem39a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19010477 ~ 19023972 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACGTAGCAGAGAGAGGCGGTGCGGGTTTGCCACGTCGGTTTCTGTGCAACGCATTTACACTGTTGCTTCTGAAGCCCGGGGCTAACTTTTAAAGCCGTTTTTATGCGTTCACCCGGAGAGAAAGCGACCCTCCAGCCTTGTCGTAGCCCGTCGCCACACCAGTGCAACCGGGAATATTGAAGCTGGAAGGCGGAGAAAATGCTAGGTGCTGTCTGGACTCGTCAGGCTGGAAGCCACATAACTGACTGATGCATCCTTGTTCACTTCTCCCCCCCGTGTGTTGTTGGTCTGGCTGTGGTACATGGTGGCTCATTGACGAGAAGGGGAGGAGTGCCAGTGGCTGTTGGTTGGTGGGCGGCGTCCGTGGTTGCCACGGTAACTGGCGACCATGCCAGGAGGTCGCAGGGGTCCCAGCAGACAGCAGCTAAGTCGCTCTGCTCTGCCGTCCCTGCAGACTCTGGTTGGAAGCAACCTCGGCAATGGCATAGGCCTCAGGAGCAGGAGCAGTAACGCGGTAGGTCTGTCTGCGCCCCCTCTTTCGGCCCTCATTACTCCGGAGCCGGTCCGTCACTCGAGGATTCCCGAGCTGCCGTTGGACAGCAGCCTGCTGTTTGAGTTCCTGCTCTTTCTTTATTTGCTGGTGGCGTTGTTTGTCCAGTACATAAACATCTACAGGACGGTGTGGTGGTATCCATACAGCCACCCTGCTGCCTCTACCTCGCTtAACTTTCATCTAATGGACTACCACCTGGCTATCTTCATCACTGTCATGTTGGCCAGGAGGCTTGTTTGGACTATAGTTTCAGAGGTGTCTCAGAGCAGCGGCAGATCGCTGCTCCGCTACGTGGTTCTCATCGCAGCTCGGCTCAGCCTGCTGACCATGTGTGGCTGGGTGCTCTGCTGGACACTGGTCAACCTCTGCAAGAACTACTCTGTGCTCAACCTCCTCTTCCTGGGATACCCATTTGGCGTGTACGTCCCGCTTTGCTGTTTCCATCAGGAGGGAGGGAAAAGCCAAACGGCACCGGCGGACTGCGATTACCCCGCCAACCACCAGCAGACCGACCTAACAGAGACCCCAATCTTTCGACCGCGAGACTTCCTCTTCCTGTTGCGTGAGAACCTGAGGGAGCAATTTTCCAGCCCCCCGCACATGCCTACGCACACCtgcccaccacacacacactcccacacaccgGAGTTGATTCGAGCAgaagtggaggagctgaagagcGACTTCAACCGGCGGATCAAGGAAGTGCTTTTCAACTCGCTGTTCAGTGCTTACTATGTAGCCTTTCTGCCGCTCTGCTTCGTTAAGAGCACCCAGTACTATGACATGCGCTGGTCATGTGAGCATCTGATCATGGTGTGGATCAATGCGTTTGTGATGCTGATGAGTCAGCTGCTGCCCCCCAGCTACTGCGACCTGCTTCACCGCTCTGCGGCTCACCTGGGCCGCTGGCAGAAACTGGAGCACGGCTCATACAGCAACGCACCTCAGCATGTGTGGTCAGAAAGTACCATTTGGCCTCAGGGGGTGTTGGTACGACACAGTCGATCTCTTTATAAGGCGGTCGGAACCTATAATGTCGCTCTGCCCTCTGATGTCTCCCATGCAAGGTTTTATTTCCTGTTCCACAAGCCATTGCGGATCCTGAACCTGCTGATCTGGATCGAGTCCAGTGTGGTTTTGTACCAGTTATACTCTCTGCTGCGCTCTGAGCGCTGGAACCACACTTTGTCTCTGGGCCTTATTCTCTTCTGCAACTACTATGTCCTTTTTAAACTGCTCCGAGACCGTATTGTGCTGGGCAAAGCCTACTCTTACCCTCTGTCCTCCAACAGTTTGGGGCTCAAGTCGCAGTAAAAGGCTCGGCACAGTGAGACCTCACCTACAAACTCTGGATGTGGAGGTCTGGTAAAGTGGAGGACCGGAGGGTTGATCAGCGCTCACGCTTGGAGGTTAAGGGACAGACTGTGAACTCATAATCTTGTTTTGATACGGTTCTATTTTTAATGCAATGTTTATATATACCtatttaaaagaatatttttattttgtatactaTTTCGAGTTACGCCGGGCATTACCACGCTGAAGACATTAGCATGTTGTGTTATGCTGTTGACAGGGAAGTCATGGAATGCCAGGAGGTGACTTTCACCAAAGATATTTTAAGTGCCGGTGGCCAATCACAGTTTGAACTTGGCCTCCGAAAGTTGGTTAAACCAGACGAGCGATTCAGAGCAGTGGAAAGGATTGTATCTGAGATGCTGAATCCTGATTGGGCTGTTCTGTTCAACCCTGAGGCTCTTGGAGCTTCTATCTAGAACCAGTTAAACTGATGCAGCTCTTTGGGGTAATGTTAGCAGGACGGAAACACTGTCACTGCTCTCAACATCTTCACCAGGAAGAATAGCTTTTAGCTTATGCtgaagctaatggggatccaaatgaaacaaacaaacaaaagccaCGATTTCACTGGTGATTTTAGAGCAAAACTTCAACATTTTAGGAATATACTGGTGGAGAGTCTGTTTATTAAATATGATGCCACAACATGCAGGTGGTTAGCTGAAtgttagcacaaagactggaaacagctagcctggttctgtccAACATTACAAagtctgcctaccagcacctctaaaactAACTAATTATAACTCTGTTTcctaaaaacaaatttaaagattgaagtgtaaaaacataattttgttGAGGTGGTTATGTGCcggacaatatttttttttttgtggctcaGTGCAGTTGCCAAGCACGATAAGTTGATCTGACCAAGAAATGGTATGGCATATTACCCCCTGTAACACAGCAAATTGTCACACATATTTTTACTGCTGCCTGCAGTAGCTTCCACCCGTGGAATAAAACTTTCCTACAAACTGACTTGAGATCAGTCTGTAGGAAAAACACCTTAGGAACTCTCTTATCCACTGCCTCTGCAGAGAATGCTGTTTTCTTCCTCATTCACTTTTGTTACCGTTTTTTTGCTATCGGTATCTGCTTGTTTCGCATCAGGGCAGTTACAGCACCAGTCTTTACAAACCTACACCAGAATAAAAACAAGTGAGAGGGGACTGAAATTTGGCATCTTTAAACTTaaaggacacaaaaaaaaaattaaacaaaaaaaaaaagcttgaccCTAGCTGTTTTCATCTTGTCATACAGCCCTGCCTGCCCTGGTTGTTACTTAACAACCGTAACGTTTGAAGGGCTGCTGCTGTAACCAGGTGATAATTAAAGTCAACTTACTGATGTCTGACCACACTTTGACATGCTAAAAATGTTCTTGCTATGATGTAGCGTATGACTCATTTGTGTTTTCTAAGGTGATCCCATCAATGGTTATTTTGTTcaattttggtgcctaaatgcTTAAACCATAATGCTAGTAAGGGCCTTACCACATCCGGTCCATCTCTTTAGGGATTGGCTGTAGATGACAACAAATGTGACTAATAATAAATATGTCTGTTGGTACGTCCCAGAACCTAACCCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638784.1 lncRNA upstream 163071 18846269 ~ 18847406 (+) True LOC120556026
TU37505 lncRNA upstream 394668 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 400599 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 565181 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 829276 18004828 ~ 18181201 (+) True LOC120555993
TU37774 lncRNA downstream 30152 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 33574 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 47848 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 59235 19083207 ~ 19087001 (+) True LOC120555697
XR_005638744.1 lncRNA downstream 63223 19087195 ~ 19091823 (+) False LOC120555698
XM_039796005.1 mRNA upstream 2091 18999528 ~ 19008386 (+) False LOC120556409
XM_039796004.1 mRNA upstream 2091 18999603 ~ 19008386 (+) True LOC120556409
XM_039796007.1 mRNA upstream 2091 18999603 ~ 19008386 (+) False LOC120556409
XM_039796006.1 mRNA upstream 2091 18999603 ~ 19008386 (+) False LOC120556409
XM_039795226.1 mRNA upstream 15199 18970586 ~ 18995278 (+) True LOC120555986
XM_039794662.1 mRNA downstream 50336 19074308 ~ 19087064 (+) False LOC120555697
XM_039794663.1 mRNA downstream 50338 19074310 ~ 19087064 (+) False LOC120555697
XM_039794664.1 mRNA downstream 50338 19074310 ~ 19086404 (+) False LOC120555697
XM_039794665.1 mRNA downstream 50338 19074310 ~ 19086330 (+) False LOC120555697
XM_039794661.1 mRNA downstream 80294 19104266 ~ 19109063 (+) True LOC120555696
TU37478 other upstream 441997 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1267743 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3524056 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3564085 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5772658 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 463274 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 473766 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 474121 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 488384 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1687132 20711104 ~ 20761147 (+) True G28770

Expression Profile