RNA id: XM_039795108.1


Basic Information

Item Value
RNA id XM_039795108.1
length 2162
RNA type mRNA
GC content 0.50
exon number 24
gene id vps33b
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40974790 ~ 40998777 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCACACCATGGATTATCTACCAGTGTGAACCAATGGCGTGAACGAAGGTGAAATGCACCAGTCCGTTCCTTTTCGTGTCCGGGGGGAAACAGCAGATGATGATGGGATCAATTCCGCTTATTTAGCTAAGGAAGCAGCCCAACATGGCTCACAGTGCCAGGACAGATTGCCCGGAGCTCCCGGACTTCTTTCTTCTCAAGAGGCTGGCCAGGGATCAGCTCATCTACCTGCTGGAACAGCTGCCGGGGAAGAAGGACCTCTTCATCGAGGCAGACTTGATGAGCCCGCTGGATCGTATTGCTAATGTGTCAACGCTAAAGcaacATGAGGTCGACAAACTCTACAAAGTGGAATACAAACCTATTGTCAGCACCTCAGATCAGCTCTGTTTTCTGATCCGGCCTAGAATACAAACTGTCAAATGGATATGCGACGTGGCCAATGCAGACAAGGCAGCAGGAAGATTTAGACGATACAAGATCATCTTTACCCCTCAGAAGTTTTATGCGTGTGACGCGGTGCTGGAGGAGCAGGGGATCATTGGCGATGTGACCACTGATGAGTGGTCTTTTTATCTTCTTCCTCTTGACGATGACATCATCAGCCTGGAGCTGCCCGAGTTCTTTCGAGACAACTTCCTGgcGGGGGACCAGCGCTGGGTGAGGACTGCCGGCAGCGCGCTGCACCTCCTCCACTCCCTCTACGGCCCCTTCTCTAAGGTTTATGGGATTGGACGATGTTCCAAGATGGCGTACGAGTCGTGGAGGGAGCAGGTGGAAGAAGGAGAACAAAAAGCTCGTCAAGCTGAAATAGGAAAGGTTTTTCTCATTGACCGAGACGTGGACTTTGTCACTCCTCTGTGCTCGCAAGTTGTCTACGAGGGACTCGTGGACGACATATTTAAAATCAAATGTGCGTGTGTGGAGTTTGGACCTGATGTGACGTCCTCTGACAAAAGTATTAAAGTCATGCTGAACTCTCAGGATAGGGTCTTCAATGAAATCCGAAACGAGCATTTCTCCAACGTCTTTGGCTTCCTCAGTCAGAAAGCCAGGAATCTCCAGACTTCATACGATAAGCGTCGGGGGATGGACATAAAGCAGATGAAGACGTTTGTGTCGGAGGAACTAAAAGGCTTAAAACAGGAACACCGGCTGCTTAGCCTACACATCGGTGCCTgtgaatcgataatgaaaaagaaaacaaagcaggATTTTCAGGAGCTGTTGAAGACAGAACACTCTTTACTTGAAGGATTTGAAATCCGTGAAAGCATTTCTTATATAGAGGAGCACATCAACAGACAGgtCTCAATGATCGAAAGTCTGAGGCTGCTTTGTCTTCTGTCTATCACAGAAAATGGACTTCTGCCAAAAGATTACCGCTCATTAAAAGCACAGTATCTGCAGAGTTATGGAGTGGACCACCTGCTCACATTCGCCAACCTGAGGCAGTTGGGTCTGCTGGTGGAGCAGCAGCCGGGGGAAACGCTGACGGTTATGGAGAGCAAGGTCGGCAAACTGGTCAACGACAGAACTGCAGgAAAGCTGAGTGACGCCTTCTCTTCTCTTGCAAAGAAGAGCAACTTCAGAGCCCTGAGCAGAAAGCTCAACCTGGTGCCAAAGTCAGATGAAGAATATGACCTGCGTGTCCCACGAGACATGGCCTACATCTTCAGCGGCGCCTACGTCCCTCTGAGCTGCAAACTCATCGAGCAGGTGTTGGAGCGAGACGGTTGGACGGGGCTTGAAGAAGTCACCAGGCTGCTAAATGGACATGaatttgctgttacagGCAGCACCGGAGCGGACTCAAAAGCAAAGAACGACGCTCAGCGCATCATCCTCGTCATGTTCCTCGGCGGCTGCACCTTTTCGGAGATTTCCGCTCTACGTTTCCTCGGCAGAGAGCGAGGTTGTAAATTCATTGTGGTAACAACTGCGATTACAAACAGTTCGAGACTCATCGAGGCCTTGCTAGACAACATTGTATGAAGCCTGTCACCACTCCCTGATGGACAGACACGGAGACATTCCTGCAGCCACTTGTCATGCGTTCCTTCCAGCACGCTGGCGTTACCGATGGGAAATGTTTCCGCTCTGTGCCTGACAACGAAAGAACTGTAAAGATGTATAAAgtgaataaatgtttttaacGCG

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K23281 VPS33B; vacuolar protein sorting-associated protein 33B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44071 lncRNA downstream 37726 40936841 ~ 40937064 (-) True G33196
TU44033 lncRNA downstream 49736 40920334 ~ 40925054 (-) True G33168
TU44032 lncRNA downstream 56206 40918227 ~ 40918584 (-) True G33167
TU43971 lncRNA downstream 312235 40661458 ~ 40662555 (-) False LOC120556513
TU43959 lncRNA downstream 385126 40564244 ~ 40589664 (-) True LOC120556146
TU44277 lncRNA upstream 446815 41445529 ~ 41445742 (-) True G33347
TU44302 lncRNA upstream 562118 41560832 ~ 41565475 (-) True G33368
TU44303 lncRNA upstream 567501 41566215 ~ 41566420 (-) True G33369
TU44305 lncRNA upstream 572288 41571002 ~ 41571236 (-) True G33371
TU44322 lncRNA upstream 671686 41670400 ~ 41672862 (-) True G33383
XM_039795107.1 mRNA downstream 1109 40952915 ~ 40973681 (-) False prc1b
XM_039795106.1 mRNA downstream 1109 40952915 ~ 40973681 (-) False prc1b
XM_039795105.1 mRNA downstream 1109 40952915 ~ 40973681 (-) True prc1b
XM_039795679.1 mRNA downstream 26225 40937815 ~ 40948565 (-) True ptpmt1
XM_039795681.1 mRNA downstream 40234 40929470 ~ 40934556 (-) True ndufs3
XM_039794128.1 mRNA upstream 16755 41015469 ~ 41018907 (-) True hypk
XM_039794130.1 mRNA upstream 64326 41063040 ~ 41115545 (-) True adamtsl5
XM_039795005.1 mRNA upstream 147804 41146518 ~ 41191697 (-) True crtc3
XM_039794807.1 mRNA upstream 201027 41199741 ~ 41273359 (-) True iqgap1
XM_039794386.1 mRNA upstream 343954 41342668 ~ 41345195 (-) False LOC120555591
TU43972 other downstream 312169 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 6375249 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 7158420 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 7158420 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 7525729 33438463 ~ 33449061 (-) False znf710b
TU44387 other upstream 759077 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 1400577 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 1986509 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 2215920 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 2453998 43452712 ~ 43456847 (-) True G33914

Expression Profile