RNA id: TCONS_00075183


Basic Information

Item Value
RNA id TCONS_00075183
length 993
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_037383
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 42348958 ~ 42500284 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGAATTAACTTATGCATAGTGGTTGGTAATGTTTGGTGTCTGAGAACAGTGAATGATCTTATAAAATCCACAGTAACCGAAACTAAAAACATTAAAAGGAATTTATGTGGCAAGAAACTGCAAACAGAAAGTCACTCGATGAAAACTCATACAGGTCTGAAACACATTAGGGACTGCCGCCTCCGTGGTGCCCGTCCAGACAATTGCAGCTGCATTCCACCGAGGACTGGATGATCGCAGCATTTTCCTCCTTAAATTCAGATACTCGTTGAAGTGAGACTCCCATAAGATGTCTAATGAAGCAAATAAGTGATTCAGTGCTGGTTTTGAAGAGGCAGGAGGGAGCAAAAACATTGCAACGCCGAGGCTGGGACCCACAAGACAGTGCTGTCGACTCTCATTTAGATGTTTTACTAAGACTCTGCCAAAAGTGTTTTTTCACCATTTGTTCCGAATAATCAGAGAAAACCCTCAGAGCTCAACTTTCGCTTTGAGAATGTGGAAACAAAGACAAAGACATGCCTGCCGGGCCCGAAGTAAATCTGGAATACTAGTTTAGCAAGTCTAATGCATTCAGTTTATGTGGTGTAAGAAGTGTAATTAAATGTCACTGATTAGATCACTCAGAAATGAATATTCTGTTGTACTTAAGTTGTTTTGCGGTTTTATGACGGCATTTCTTCCTTGGAATTGACACGCTTGCACATTATAAACTTAGTTGTATCACAGTAGCTCTCTGTGAAATTTAATCATTATTTGCTCATTATGTTGACCACTAGAGGGCTGTTAACTATTAGAAATGGTGTTAAGTATAACCAACAGTACTTTAGTCTTTATGTGTTCCTTTTTAGTTCCATTTTAGATGGTTTAAGTAAGTTTGCTAGCCTTTgaaacttttatttgttttttaatgaaaaaaaaaaaactaattagaaATGAAATAGTTTGGGTTTAAAAACTGGATTAAATTGTGTATTCATTGACAAACTCA

Function

GO:

id name namespace
GO:0007308 oocyte construction biological_process
GO:0007309 oocyte axis specification biological_process
GO:0007028 cytoplasm organization biological_process
GO:0007314 oocyte anterior/posterior axis specification biological_process
GO:0007315 pole plasm assembly biological_process
GO:0007350 blastoderm segmentation biological_process
GO:0007351 tripartite regional subdivision biological_process
GO:0008595 anterior/posterior axis specification, embryo biological_process
GO:0008358 maternal determination of anterior/posterior axis, embryo biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0045495 pole plasm cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043186 P granule cellular_component
GO:0060293 germ plasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074932 lncRNA upstream 299515 42158376 ~ 42158616 (+) True XLOC_037381
TCONS_00075180 lncRNA upstream 350045 42102201 ~ 42108086 (+) True XLOC_037379
TCONS_00073541 lncRNA upstream 651776 41788217 ~ 41806355 (+) True XLOC_037375
TCONS_00073535 lncRNA upstream 859304 41509948 ~ 41598827 (+) True XLOC_037369
TCONS_00073534 lncRNA upstream 879129 41509948 ~ 41579002 (+) False XLOC_037369
TCONS_00075186 lncRNA downstream 231915 42732199 ~ 42905622 (+) False XLOC_037385
TCONS_00075187 lncRNA downstream 232707 42732991 ~ 42901537 (+) False XLOC_037385
TCONS_00075188 lncRNA downstream 232708 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00075189 lncRNA downstream 394559 42894843 ~ 42901537 (+) True XLOC_037385
TCONS_00073563 lncRNA downstream 1297859 43798143 ~ 43801464 (+) False XLOC_037388
TCONS_00073555 mRNA upstream 187171 42270043 ~ 42270960 (+) True XLOC_037382
TCONS_00073554 mRNA upstream 187398 42269059 ~ 42270733 (+) False XLOC_037382
TCONS_00073553 mRNA upstream 293387 42157578 ~ 42164744 (+) True XLOC_037380
TCONS_00073551 mRNA upstream 332045 42095220 ~ 42126086 (+) False XLOC_037378
TCONS_00073550 mRNA upstream 332802 42095220 ~ 42125329 (+) False XLOC_037378
TCONS_00073556 mRNA downstream 46220 42546504 ~ 42650623 (+) False XLOC_037384
TCONS_00073557 mRNA downstream 106397 42606681 ~ 42650623 (+) False XLOC_037384
TCONS_00073558 mRNA downstream 106854 42607138 ~ 42649598 (+) False XLOC_037384
TCONS_00073559 mRNA downstream 106862 42607146 ~ 42650179 (+) True XLOC_037384
TCONS_00073562 mRNA downstream 1297618 43797902 ~ 43880326 (+) False XLOC_037388
TCONS_00073552 other upstream 332747 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 362954 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073545 other upstream 419812 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073540 other upstream 724521 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073538 other upstream 775121 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073560 other downstream 831111 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073561 other downstream 1274967 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073566 other downstream 1355211 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073582 other downstream 2431891 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 2495985 44996269 ~ 44997423 (+) True XLOC_037398

Expression Profile

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