RNA id: XM_039795115.1


Basic Information

Item Value
RNA id XM_039795115.1
length 1929
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120555922
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7775633 ~ 7783499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGAAAGGGCTTGACTCGCAGTGAAGTTTTAGATGTGATTATGCAGCCTGATTCCTCCAGCGAGCTGGAGGATGTATCGTTGTCTCCCTCTGACACCACAGACTCAGGAGAGTCCGATCCTGATGTATCGTCGTCTCCCTCTGACACCACAGACTCAGGAGAGTCCGATCCTGATGTATCGTCGTCTCCCTCTGACACCACAGACTCAGGAGAGTCCGATCCTGATTTGGATGTGCCACCCTCATCATCCTCTCTAGCTTCCACTGAAGGCGAGGAGGATTCGGAGGATCCTGGATCTGGCCGCGCCAGAGGTGTGACTCCAGGGCCGACGCACTATGCCATTGCAAGGGTCCAGAACATTGATTCTGTGTTCAATCTGTTTTTTACAGAGGAGATGATTGACCTCATTGTCAGCATGACCAACCTCCATGGACGCCGCACAATGAGAAACTGGACCGGGATGGACTCCACAGATCTCCATGCCTACATGAGGCTACTGATTTTGGCCGGCGTCTACAGGTCCAGAGGGGAGTCCGCACGTTGCCTGTGGGATGATCGCAGTGGTCGTGTGATTTTTAGAGCCACCATGTCCCTCTCAAGAGTCCATGAAATCAGCAGAGCTCTGCGTTTTGATGACAAGCTGCAGAGACCAGCTCGGCATAGAGAGGATAAGCTTGCCCCGATCAGATCCCTGTGGGAAATGTGGACGCATCGCCTTCCCCTCCTCTTCAACCCTGGCAAAGATGTCACAGTGGATGAGCAGCTTGTGCCATTCAAAGGGAGATGCAGCTTTCCGCAATACATGCCGAAAAAACCAGCAAAATACGGGCAAAAAATTTGGGTGACTGCTGATGTTGGCACATCCTATGCCTGGAGGTGTGACATTTACCTGGGTAAGACAGGTAATGCTGCAGAGGTGGGTCAGGGAAAGtgtgttgtcatggagatgacAGAAGGACTCCAGGGCGTCACTGTCACCTGTGACAACTTTTTTACCTCCTACTCACTTGCTCAGGAGCTTCTGCGGAAGAAAATAGCCTTGGTCGGGATGATCAGGAAAAATAAACCAGAGCTGCCACCCAACCTGGTGCAGGCTAAAGGACGACCTGCCCTCTCCACCGTCTTCGCCTTCACGAAGAACACCACGACTGTGAGTTACATTCCGAAACGGGGGAGGAATGTGATCCTCATCAGTACAAGGCACCGCGAAGCAATGGTGACAGAGGGACCAAAAAAGAAGCCAGAGATAATCGCAGATTACAACCGCTGCAAGGGAGGTGTCGACAATCTAGACAAGgttgTCGGCACCTACAGCTGCAGAAGGAGGACCAATCGGTGGCCACAGACGTTGTTTTTCAATATAATGGACGTCTCGGCATATAATGCATATGTCATCTTCACAGCTGTGGATCCCTCCTGGAACCAGGCGAAGCTGTTTCGGAGAAGGCTTTTCCTAGAAGAGCTGGGAAATTCTCTGGTCTCTGCAGCAATACTGAGGAGAGAGCACCTCCCTCGTGCACCAGTTGCTGCTTCACTAGTGAGAGAGATTCAGTCTTCTGCAGCTGTCCCTCCAGACACAGATCCACAGACACCAGCAGGCACCAGGAGCTCAGAAGGGAAGAGGGGAACATGCAAGTGGTGCACaggacaaaaaaagaagaagaacagtCAGCACTTGCATCCGTTGTGGTGGGCACACTTGCAAAGAGCACCAAGTGATATGCTGCAAGTCCTGCTGGAAAgattgaaaacacacacacacacacacacacacacagtttgtggTTCGTTTAATTGTTTAGTTCTTCATCCATCCTCAACTCTTGAACCattAAAAGGATGTGCAGAGTCGGATGTCAGTGCCAGTGAACAAGGCATGCAGGTAACCTTCTGCTTCATTTTCTTCACGATGAAGCCTGTGATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638768.1 lncRNA upstream 59475 7713299 ~ 7716158 (+) True LOC120555855
TU34815 lncRNA upstream 101692 7665796 ~ 7673941 (+) True G25959
XR_005638762.1 lncRNA upstream 141136 7632831 ~ 7634497 (+) True LOC120555849
XR_005638763.1 lncRNA upstream 142808 7630122 ~ 7632825 (+) True LOC120555850
TU34800 lncRNA upstream 438381 7330710 ~ 7337252 (+) True G25950
TU34885 lncRNA downstream 51404 7834903 ~ 7835181 (+) True G26025
TU34888 lncRNA downstream 63002 7846501 ~ 7846739 (+) True G26028
TU34931 lncRNA downstream 329687 8113186 ~ 8113391 (+) True G26063
TU34943 lncRNA downstream 433487 8216986 ~ 8217378 (+) True G26075
TU34957 lncRNA downstream 466560 8250059 ~ 8250273 (+) True G26089
XM_039794981.1 mRNA upstream 104832 7354877 ~ 7670801 (+) True adamtsl3
XM_039794983.1 mRNA upstream 175274 7354877 ~ 7600359 (+) False adamtsl3
XM_039794993.1 mRNA upstream 444931 7317909 ~ 7330702 (+) True LOC120555848
XM_039794992.1 mRNA upstream 444931 7317911 ~ 7330702 (+) False LOC120555848
XM_039795970.1 mRNA upstream 484763 7232548 ~ 7290870 (+) False sh3gl3a
XM_039794987.1 mRNA downstream 155713 7939212 ~ 8069667 (+) False efl1
XM_039794985.1 mRNA downstream 158061 7941560 ~ 8069667 (+) False efl1
XM_039794984.1 mRNA downstream 158138 7941637 ~ 8069667 (+) True efl1
XM_039794986.1 mRNA downstream 158138 7941637 ~ 8069667 (+) False efl1
XM_039794990.1 mRNA downstream 357385 8140884 ~ 8146927 (+) True mex3b
TU34538 other upstream 1485857 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1485857 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1487556 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1508925 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 1722736 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 970202 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 1285230 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1783332 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2063778 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 4248122 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile