RNA id: XR_005638773.1


Basic Information

Item Value
RNA id XR_005638773.1
length 1932
RNA type transcript
GC content 0.45
exon number 10
gene id mtfmt
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11476506 ~ 11510300 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAGAAGAAGACACGACGGAAGTGCAATGGAAAACATGGCGGCGTCCTCTGTTGACACATTTAGGGCAGTTCGATTACAGTCCCAGCCACTTTCCCAGTGTCCGCACTGACACTTTGGACACATCGCCGAAGCCACAGCTGGTGTTGTATGAAGTGTGTGGCAAGACAAGTCTCTAAACATGTTGACCCACTTCCAGCGCTGCTGCCTGCGCTGTTGTATAACGCTGCAGCCAGTGTTGAGGAGGCGGCCTGGCTGTAGATTCATGTCATCATCGGGACCCCCGTGGAGGCTCCTGTTCTTTGGCTCTGATCAGTTCGCTGTGGAATCTCTAAAACTCCTCACATCCAGCAGGATTTCCAGTGAAAGGATAGTGGAGTCCCTTGAAGTTGTTACTTTGTCTGGTAACGTCCCAGTGAAGAGGTTTGCTCAACAGAACCACCTTCCAGTCCACAGCTGGCCCCCTGACAATGTGGACGGACAGTTTGATGTTGGGGTGGTGGTCTCTTTTGGCTGTTTACTCCATGAGAGTCTGATCAACAAGTTTCCAtaCGGAATTTTGAATGTTCACCCCAGCCTGCTGCCTAGGTGGCGAGGACCAGCACCCATCTTCCACACCATCATGCATGGTGACACTGTGACAGGGGTCACAATCATCCAGATCCGCCCTCATAGGTTTGACGTGGGTCCCATTCTCCACCAGGAGCTTCATCAGGTCCCTGAGAACTGTACTGCTGAGGAGCTTGGAGCTTCTCTAGCCACGAAGGGAGCACATCTGCTGATTGATACGCTCATGACACTGCCTGAGAGACTGGCACATAAAAGGGAGCAAAAACAGACAGGTGCAACTTTTGCCCCGAAAATCAATGCATCCATGAGCTGGATAGTGTGGGAGGAACAGACTTGTGACCAAATTGATCGTCTGTATCGTGCCATCGGATCTCGGATACCTTTGAAGACCACATGGATGGGCAGGACAATAAAACTTCTGGATTTTGTAGGAAAATGTCACATTTCATTATTAGATCAAAGACGGAAACTGGTCCCTGGCACATTGAGCTATCAGAAGGAGTCCAACACTCTGGCTGTCTGCTGTAAGGTCTGTTAAACTTTGTTAGCTGTATTTAGTTTACTACTGATAATGACTTAAACCTGCACACCTGTCCCTCTTTACTCCAGCCCCAACACCATGTGAAGCATGAAATCATATAAATTCATttgaatttttgtttttttacatgatGTGTAAATGTCCTGAACAGCAGAATAATTCAGATGTGATAACTTGTGCAAATGTCCCACATATCACTCAAAATAATTTCACAGTAAAGCCTTTTTGACAAGCATGTTCATACTTTAATATATTAAAGCAGGGGTGTCCAAAATTTTAATCCCAGGGGCCAGATggagaaaaacacatttcccttttttttactcatattttattgatttttagtATAAACAATAAAGAACACAGCGCAGCGTCAGTGGGGTACATGTTCTTAGTATTAATACTCAAATGTCTCTGACATCAAAGTTTTTGGTGGTGACTCTGTATTGTGATTGGTATTCTGTCAATTTTTCGCATTTCTTATCATATTTTGCTTGCTGGAGTCTCAATATATACGTCAGTCTTTCCATGTTGAGTATCTCCTCGACTACGTCCAGCCAGTTCCTCAGAGTGGGAGGGTCCTCTCTACACTATTTTCTGGTGATTGCCTTCTTGGCTGCAGCCAGCAGAATTTTAACCAGTATACTCAGGATCACACCAATACACCAAAGGTCGGATCTGTGCAGCATAGTAATATTCTAAGTGGTTTGGATGGCTGGGTGGGATTCAAGGCAGTGCTGCTGAAAAAAAGGCTGACAGCGGCTGATTTCTTTAATGGCTACCTGCATCAGACAATGCAGAAGAAGACACCCTATCAGACAG

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA biological_process
GO:0004479 methionyl-tRNA formyltransferase activity molecular_function

KEGG:

id description
K00604 MTFMT, fmt; methionyl-tRNA formyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35770 lncRNA downstream 5537 11470780 ~ 11471227 (-) True G26785
TU35726 lncRNA downstream 130893 11345628 ~ 11345871 (-) True G26750
TU35713 lncRNA downstream 250352 11225218 ~ 11226412 (-) True G26737
XR_005638732.1 lncRNA downstream 292940 11183133 ~ 11183824 (-) True LOC120555566
XR_005638813.1 lncRNA downstream 309460 11165880 ~ 11167304 (-) True LOC120556158
TU35796 lncRNA upstream 49269 11559568 ~ 11559895 (-) True G26802
TU35798 lncRNA upstream 53923 11564222 ~ 11564551 (-) True G26804
TU35799 lncRNA upstream 54385 11564684 ~ 11565380 (-) True G26805
TU35800 lncRNA upstream 55963 11566262 ~ 11566625 (-) True G26806
TU35829 lncRNA upstream 61514 11571813 ~ 11572177 (-) True G26831
XM_039794604.1 mRNA downstream 13404 11387677 ~ 11463360 (-) False celf1
XM_039794616.1 mRNA downstream 13404 11391038 ~ 11463360 (-) False celf1
XM_039794610.1 mRNA downstream 13404 11391038 ~ 11463360 (-) False celf1
XM_039794609.1 mRNA downstream 13404 11391038 ~ 11463360 (-) False celf1
XM_039794606.1 mRNA downstream 13404 11391038 ~ 11463360 (-) False celf1
XM_039795833.1 mRNA upstream 63734 11574033 ~ 11599614 (-) True c3h16orf87
XM_039795832.1 mRNA upstream 68425 11578724 ~ 11599622 (-) False c3h16orf87
XM_039794533.1 mRNA upstream 96741 11607040 ~ 11636133 (-) True vps35
XM_039794534.1 mRNA upstream 132932 11643231 ~ 11649706 (-) False LOC120555651
XM_039793926.1 mRNA upstream 223142 11733441 ~ 11740920 (-) True fgf19
TU35186 other downstream 2180018 9295068 ~ 9296746 (-) True G26298
TU35108 other downstream 2497688 8852787 ~ 8979076 (-) False LOC120555589
TU34939 other downstream 3329863 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 4132008 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 4832158 6642446 ~ 6644606 (-) False dok4
XR_005638741.1 other upstream 132932 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 133272 11643571 ~ 11669269 (-) False LOC120555651
TU35894 other upstream 450402 11960701 ~ 11961772 (-) True G26891
TU35932 other upstream 794240 12304539 ~ 12304824 (-) True G26924
TU36095 other upstream 1559697 13069996 ~ 13095766 (-) True G27075

Expression Profile