RNA id: XM_039795133.1


Basic Information

Item Value
RNA id XM_039795133.1
length 3032
RNA type mRNA
GC content 0.44
exon number 9
gene id homer2
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18607469 ~ 18639221 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGACCAACGATCAATATCAAATCGTTTAAATTCTGATAGGCAATTTAATACAACAACGGTCGAATATAAACCCAAGTTATTAGGCTGATACATATGTTTAACTGAAGATGCAAGTAGCCTAGAAAGCTGTAACCGAACTGCTTGTTGGCTTAGGCTAATTTAGGACCAACTACCTGAAAGCCATCGAAGTCACTTACAAACATGGAGCAGCCGATCTACACCACCAGGGCCCATGTCTTCCAAATTGACCCAACCACCAAGAAGAACTGGGTCCCTGCCAGCAAGCAGGCCGTCACTGTCTCTTATTTTTACGACAGCACACGGAACAGCTACCGCATCATCAGCGTGGATGGATCcaagGTGATCATCAACAGTACCATCACGCCGAACATGACGTTCACCAAGACGTCGCAGAAGTTTGGCCAGTGGGCGGACAGCAGGGCCAACACTGTGTTTGGACTGGGCTTCGCTTCAGAGCAGCAGCTGGCCAAGTTTTCTGAGAAGTTCCAGGAGGTAAAAGATGCAGCCAAGGTAGTAAGGGAATCTCAAGAAAAGGTGGAGACGATGAGCAATCACTCCCAGGAGTCTGGACGTGAGACGCCCTCATCCAACCAGGCGTCCAGCCTTAATGGAACAGATGATGAGAAAATCTTCCATGTTGGTCCGGAGGCTGCTGTGCTGAAGACCGAGAACGAACGTCTCAAGAGTGCAGTAGAACAGAGCAACACCAATGCCAAGAAGTGGGAAACAGAGCTGCAGACTTTAAGAGAAAATAATGCCAGGCTGGTGGACGCACTGCAGGAGTCCTCCGCTAATGTAGAGAGCTGGAAGAAACAACTTAGTGCCTGCAAGGAAGAGAGTGACGCGCTCAGGGAAAAGATTACAGAACTAGAAGCTCAGTGTAACGAAGCCAATCAGGAGAAGCAGAAAAACGCCCAACTGTCTGTACGAGTGCAGGAGCTGGAGACTGAGCTGCACGAAAAAGAGCAGGAGCTGGAGAATCTGAGGAAGCAGGCCGAGATAATCCCTCAGCTGATGGCGGAGTGCGAGAGCATCACCGCAAAACTGCAGACTGCCGAGACGAAGAACAAGGAACTGGAGGGGAGGATTGGGGTTCTTCAGCTGGACGTAGACGACAGTCAACACAAGCAGGGCAACATGAAGAACGAGCTGAAGAAGTTCATGGATACACTGGATGGAAAGATAGACGAGCTGCATGAGCTCCGGCAGGGGCTCTCAAAGCTCGGCGTCGATAACTGAGTAAAGTGGCACTGAGCTGaaagggtcagaggtcaggtaCGGAGGGGATTCACTACAGTACGTCTTCAGGGCAGGAACTATGTGGCACCTACTCCCCCGAGGTGATGTCCACTCAGACACTATCAGCTTTGGCTTCTAATAAACACTACCATGTGCGAGAGAGATGTTTtttggagagggagagagagactggcAGGAGGAAGGCCAGCATGCTCCACCAAATGgctccattttgtgtgctggcATTCTTAAACTAAatcaagaatcacactttgagCTTTCttatctgtttctgtgtgtgtgtgtgtgtgtgtgggggactACTTTAAAAAGCTGGTGGTGGGTTCTTAGAttctgtccatctgtctttttttctgaagGCTGCAGCACTTCTTCACAGGCAGTCTGAGCGAAGAGTAGAAGAGGGGACTAAAAAAgggctaaaataaataaaacacaaagacgATGCTGTTCAGCATCACTCAAGTAATAATTGGTGTTAATCCTTGTGGCCCCCTCAGAGAATTAGAGATGAAATCTTTCTACAGACTGTCCTTGCTGTTGCCTCTCGTCTATCTCAGGTGTGTTAGAAGACAGTTTGTACACATTAGATTATATGCACATACGTGACAAACGGCCGTGACACAAAGTGCCTCCAGGCGAGTCTAAATCTACCTGGCAAGGAGAACTGGCCAAGCGATGACCATCACCATAATTATAACTTTTTGTGAGAGAACCTGATGAAAAACAAACCTTCTCACTAATAAAATGAGATGAGAAGAAAACGCAGGCATGCAAGCCCATCCCGAGGACGTTAATGTGGTGGTAAACTTCAAGAACAAAATGTCATTTTGCACAAAAAACAGTCCGAGGAGGGACCACAGCAGGAAGTCATCAACTCTCTTGTGGGTGTTTTCCGTAaacacttaatttttttttgttattgattATTTTGCTTTAAGAAGGAAAGTTCTCTTGTCTCGGGAGCTTTccttcaaaaacatccaaaaatatGAATAGGAACCCCAATTTTCCCAAGAGTCTAGTGCAGTGTTCAGAGGACTTTGTGTGTTCAATAGTGTTGTTGTCCACATGTAGAACAAAGATGTCTCCAAGGCTGTTGATGTGCTTCCTACACACTAGTCTTTGTTATGGTGGTGGTTATTTGTGGGTGAGGGGACTAGGTGCTGCTCAATGGGTGAATAATGTGAAAGTGTACTTTACTGAGAACATTTAGATGGCGTTGGCCTTTTCACTACAAACCCTGTCAAATTCttggtttttgttttatatatttatttattttggtgcCTCTCTGCAACTAGTGTTTCTAGAACATACCAAGTAAATCAAGCTTATCCTATAATGTCTCTATAGATGTAAGATAATATATTCTAAAAGATACCAAACTGTCAGGATTCAGAGGCTTCATAATTGAGGATTTGTTTGCAGGATGGTGTCACAGCTGTTTTTGGGGAAGTCGATCTTGAAACATGGTACATTTGAAATAAGAGGCATATGTTGCAGTGGCACATTTACTGGGTAATACTATGATGTTATAATAATTCTATATTTTTTCATCAGTGTTTTGATCTGTGAAGGGACATTTTGCTTCTCTCTGTGTTTAACTCTACTGTTCATAAATCACCTGAACCTGGAACACAAAGTATGATCCTTCCTTTTGAACCAATGCCTCTTGTTCACTTTTGTGACTCCTGTTCAATATTGTACAATAGAACTGACAATTGTTAAAATTTAGTTTAATTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37650 lncRNA downstream 38392 18568101 ~ 18569077 (-) True G28309
TU37640 lncRNA downstream 49250 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA downstream 49250 18555965 ~ 18558219 (-) True G28302
TU37628 lncRNA downstream 109380 18497849 ~ 18498089 (-) True G28291
TU37621 lncRNA downstream 136019 18469813 ~ 18471450 (-) True G28284
TU37674 lncRNA upstream 10830 18650051 ~ 18652441 (-) False LOC120556268
TU37814 lncRNA upstream 366687 19005908 ~ 19008421 (-) True G28429
TU37827 lncRNA upstream 397627 19036848 ~ 19037059 (-) True G28437
TU37828 lncRNA upstream 414103 19053324 ~ 19053869 (-) True G28438
TU37829 lncRNA upstream 414876 19054097 ~ 19054692 (-) False LOC120555695
XM_039794523.1 mRNA downstream 22875 18575060 ~ 18584594 (-) True LOC120555642
XM_039795684.1 mRNA downstream 125446 18471714 ~ 18482023 (-) True LOC120556233
XM_039794656.1 mRNA downstream 141388 18456550 ~ 18466081 (-) True LOC120555694
XM_039794653.1 mRNA downstream 156450 18439582 ~ 18451019 (-) True usp8
XM_039794654.1 mRNA downstream 156450 18440985 ~ 18451019 (-) False usp8
XM_039795742.1 mRNA upstream 10808 18650029 ~ 18658659 (-) True LOC120556268
XM_039795195.1 mRNA upstream 32131 18671352 ~ 18676489 (-) True ap1s2
XM_039795677.1 mRNA upstream 60124 18699345 ~ 18705558 (-) True LOC120556226
XM_039794056.1 mRNA upstream 67069 18706290 ~ 18718603 (-) False ppef1
XM_039794055.1 mRNA upstream 67069 18706290 ~ 18718603 (-) True ppef1
TU37603 other downstream 186970 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 223827 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 386919 18218122 ~ 18220550 (-) True G28121
TU37147 other downstream 1094301 17509950 ~ 17513168 (-) False G27925
TU37697 other upstream 80151 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 420534 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 484345 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 484345 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 2941821 21581042 ~ 21583498 (-) True G28933

Expression Profile