RNA id: XM_039795134.1



Basic Information


Item Value
RNA id XM_039795134.1
length 1190
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120555930
representative False

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18639282 ~ 18642799 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTAAACTATGTTTATTTGTTCCGGAGGAAGGGTTTTGGCGACGTACTGGTCTGGGACATCTTCCGAAAAAGTCGTTTCCTGAACATTAGATAGAAGTTTTTAGCGAAAGCAAAAATCATTCGCGTCGTGCAAAGCATGGCCGAGACCAATGAAAACCTGAAGAGCTACGAGGAGATGTTTGCCAACAGATTTTCATCGGACGACAAAGAATACCAGCAGTATCTGGATCGTCCAGCTGACATCCCACCCATCGTCGAGGACTGGAGGAGTCGTGGAGGTGGAAACCACAGAGGCAGGGACAGGTACCAGGACCGTCGAGGTCGTGGCTGGGGAGGAGGTCGAGGTTGGGGAGGGGAACATCGTGGGCAGCAACACTGGcatgacagagacagagacagagacaggcactGGGGGCATGGAAGTGGGTATCAGTCAGGCCCTCCAAGCTCCAACCAGGGATACAACTCCTATCATCAGAGACCACATTATGACCGCTGATCTACTCTAATCTCTCGGGTGTTAACAGTATTCAGTCTTACAACTTGCATTCTTGACTCTCCTTTCCAGTCTCATAAGCTGAGTATAAGGCACAACGGTTGAGCTACCGgtatatatcaatataaataATGTACTGTCGATCATTGTAATTGTGTggaaccttctttttttttaatattgtgacagttttctttttgtcagaATTTAAAATACAAAGCCAATATGTATTCCAATCTTTGCCAGAATTATTTCTGAAATGTGACTGCAGAAGATAACCGATCCTGTTTGACTTCCACTTACCTTTTTACTATACCAAAATACAGCCATTCTTTCCCATATGTATTGCTCAGCCCTGTAATCATAATgcattttcattacatttttgtaaatgatAATAAGAACATACTTGCAGTTTTCAATACTGGCACTCATTACAAATGACAAAAGTAACACATTTCTCTTATAATATTTCAGGTATGTGGGCTGTTTTGATTATTACATTATATGTTGGACTTTTGTGTTCAGATAGTTTTGCAGCTACATCTTTACATGCTTTTTGGGTACAGTATTGTTGCAAAGAGTGAAtctgaatttccagagaaaatcTGTTtgtaatgcagctttattttttGTGTCACAACATTGTAGAAGGATACtgttaaactgtttttaatAAACATGTATTTTCTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37505 lncRNA upstream 23473 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 29404 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 193986 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 458081 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 720086 17918900 ~ 17919196 (+) True G28083
XR_005638784.1 lncRNA downstream 203470 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 411325 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 414747 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 429021 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 440408 19083207 ~ 19087001 (+) True LOC120555697
XM_039794522.1 mRNA upstream 34312 18585773 ~ 18604970 (+) True LOC120555641
XM_039796123.1 mRNA upstream 63340 18561873 ~ 18575942 (+) True LOC120556478
XM_039794633.1 mRNA upstream 81947 18505528 ~ 18557335 (+) True pde8a
XM_039794634.1 mRNA upstream 81947 18515850 ~ 18557335 (+) False pde8a
XM_039794034.1 mRNA upstream 148214 18486062 ~ 18491068 (+) True gatm
XM_039795743.1 mRNA downstream 17063 18659862 ~ 18663990 (+) True LOC120556269
XM_039795745.1 mRNA downstream 17845 18660644 ~ 18663990 (+) False LOC120556269
XM_039795194.1 mRNA downstream 21708 18664507 ~ 18670988 (+) True zrsr2
XM_039795673.1 mRNA downstream 34542 18677341 ~ 18698498 (+) False phka2
XM_039795672.1 mRNA downstream 34557 18677356 ~ 18698498 (+) True phka2
TU37478 other upstream 70802 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 896548 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3152861 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3192890 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5401463 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 844447 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 854939 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 855294 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 869557 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 2068305 20711104 ~ 20761147 (+) True G28770

Expression Profile