RNA id: XM_039795154.1


Basic Information

Item Value
RNA id XM_039795154.1
length 3483
RNA type mRNA
GC content 0.50
exon number 28
gene id LOC120555943
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10425163 ~ 10465554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGTCGGCGGTGGACAGCATGTGTTGTCGAGAGGTGGATGCCTACTGGGCACTAGTTGAGGGTTTAGTCCCGGCCACGGACATTACCTGCCTGACGCTCCATCCCGGCTTTGATGCCTGCTGCCTCAACCCGTTCTCGCTGCAGGTAGCATACCTCAACTTCAGACAGGAGTATGGCCCTCTCCAAGCCAACAGACCAGAAGTTTCTGTGGATCAGCAAATGGCTATGGCAAACGAGTGGCTGCTGTGGCTGACCCTGTCTGCCATCGCAGCTGCTTGGCACAGCGGTGTGAGTCTCATCCACAATGGCCAGGTTTGCAGTACGTGGGGTAACTTCCACTTCAAGACCTTTGAAGGAAATGTTTTCCAGTTGCACTCGACTTGCAACTACGTCCTGACCTCTTCATGCAGGAGCAGTTACAAGGACTTCAACATCCAGATAAGAAGACAGGAGGCTGGCAACCATCAcaccatcaaaaacataattatgaaGCTGGAGGGTtcagagctgtTAGTGGAGCTCTCAGAAGGCTCAGTGGTTATCGATGGAAAACCaGCCAACCTACCATTCAGTCAAGCAGGAGTGCTCATTGAGAAAACTCCCACCTACATCAAAATCAAAGCAAAGCTGGGTTTAGTTGCTATCTGGAATGAGAAGGACACTTTTATGGTGGAACTAGACCTTAAGTACAAGAACTAAACCTGCGTTCTTTGTGGAGACTTCAATGGGGTCCAGCTCTATGATGAGTTCTACAGCCATGGTGTAAAAATATCCCCCATGGATTTTGCTAACTTCTGGAAAATGGATGGTCCAACTGAAAGCTGCTCTGACTACACGCTGGAATCAACACAAAGCTGTAACAACATGAAACCTCTGTGTGAGCAGATCCTTACAGGGCCATCCTTCAACAGCTGTCACAGTCTGCTGGACATTGCCTCCTTTACTTCTGCCTGTGTTGCAGACCTCTGCAACTGTGACAATGGCATGAATGAACACGTTGACCCCTTCTGCCTGTGCAACACTGTGTCGGAGTTCTCCAGACAGCGTGGACATGCGGGTGGCAAACCCCAAAACTGGAGAACCAAAGAGATCTGCTGGAAGTCATGTCCCGACAAAATGGAGTACAAGGAGTGTGGGAGTCCCTGTGCTGATACCTGCCCCAACCCAGAGGCCAGCCACACCTGCTTCTGCCCTGCAGGCACTGTGCTGGATGATTTAAACGGAAAGGGTTGTGTCCGATTAAACGAGTACTCCTGCAGCTACAACAGCAAGATCTATGGACCGGGGGAGTCCTACTCCAGTAACTGCAAAAAATGtgtgtgtgcgagtgGCCAGTGGATGTGTATGGAGCAGAACTGTCCAGGAACCTGCGCTGTGGAGGGAGGAGCCCACATCAACACCTTCGATGAAAAAGTCTACACCTTCCATGGGGACTGCTCCTATGTGCTGGCTAAGgaCTGCAGTGGATCCCAGTTTGTGGTACAAGGAGAACTGGAGTAGTGTGGACTGACTGAGAGCGAGACCTGCCACAAGTCTGTTACCTTGGGTTTGTCTGGAGGGGTTAATGTGATCAAAATCCAGTCCAATGGCAAGGTTTTTGTGAATGGCATCTACGCTCAATTACCCTTCTCTGCTGCTGGGTTCTCCGCCTTCAGAGGGTCCTCTTACTACCTGCTGGTGCAAACGTCTGTTGGTGTTCTGTTGGAGGTGCAGCTCCAGCCAGTCATGCAGCTCTACGTCAAAGTGACTAGTGACTACCAGGTCAAGACCTGTGGTATTCTGTGTGGGAACTTCAATGGTAACCAAGCTGATGACTTTCTAAAGCTCAGTGGCGTTCCAGATGCCACAGCACCTGGTTTTGTCAACAGCTGGAAGACACATGCTGGTTGCCCTGATGTTAAGAGCAACTTTGAGAACCCCTGCAGTCTTAGTCTGGATAATGAGAAGTATGCCCATCACTGGTGCTCCATGCTGAGTGACCCTCAGGGAGTGTTTGCCTCCTGTCACTCAGAGATCAGCCCTGACAAAGAGAACTGCATGTATGATAGCTGTAACTGTGAGAAAAGTGAGGACTGTATGTGTGCAGCAGTCTCCTCCTATGTCCATGCATGTGCAGCTGCAGGAATCCAGCTCACCGGCTGGAGGGCGACCATCTGTGAGAAATATGCTAGCTCATGCCCCAGCAGCACGGTCTACTCCTACAACGTCACGTCCAGCAGTCGCACCTGCCGCTGCATCAGCACCACAGACCCCAGCTGCTCAGTGGTGCCTCCTGGACAGGTCGTCAACAAGGATGGGGTCATGTGCACCTGTAAAGAGGGCAAACTCAGCTGCATTGGAGAGGTTATTATACAGCCAATATCTGTTTACAGCACTTGTAAAGACAGGAAGTGGCACTGCACTACCAACCAGTGTGATGGAACCTGCTCTGTCTATGGTGATGGACACTACATGACTTTTGATCAGAAGCGCTTCACGTTTGATGGCACgtgtgtgtgtgtgtgtgtgcaggactACTGTGGCAGTGCTCAGAGTAATGGAACCTTCAGAGTGGTCACTGAGAATGTTCCCTGTGGAACCACAGGAACCACCTGCTCCAAGACCATCAAGATCTTCCTGGGGAGTGCAGAACTGATTCTAGCAGAGGGAAGCTACCAGCTGCTTTCAAGTGGAAATGAATAAACAGTTCCATTCAGTTACAGCACTATGGGCATCTACTTGGTAATTGAAGCCAACAATGGACTAATTTTCATGTGGGACAGGAAGACCACCTTGTTCATCAAGCTCAGCCCAAAATATAAGGGTtatgtgtgtggtctgtgtggcAACTATGATGACAATGCAAATAATGACTTCACCACAAGGTGCCATGCTGTGGTGGTAATCCCACTGGTGTTTGGGAACAGCTGGAAGGATTCACCAAGCTGCCCCGATGCTCACAGCATCACCAGCCCCTGCACAGCCAACCCATACAGACAGGCGTGGGCCCAGAAACAGTGCAGCATTATCCAGAGTAACGTCTTCTCTCCCTGCCACTCCATTGTGGATCCTGCTCCATACTATGAAGCATGTGTATTTGACTCCTGTGCTTGTGACACGGGTGGAGACTGTGAGTGTTTCTGCACTGCTGTGGCTGCTTATGCTGAATCCTGTAATCAAGCTGGCGCCTGTATACGATGGAGAACCCCAAAGATTTGTCcTATCTTCTGTGATTACAGTGTGTGTGGTGAATGTGAATGGCACTACATGCCATGCGGATCTCCATGTATGAAATCCTGCAGGAACCCCTCCGGCAGCTGCTCGTCACAGATGCCTCCTCTAGAAGGTTGCTATCCAAAATGTCTTCCTGCTCAGCCATACTTTGATGAGGATACAATGACAtgtgtgttaaaaaaacaatgtggcTGCTACGATAAAGAGGGGAAACACTACAATAATAGTGACAAAGTGCCAAcaactgaaaactgtcaaacatggtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35450 lncRNA upstream 39522 10385230 ~ 10385641 (+) True G26512
TU35446 lncRNA upstream 88781 10330691 ~ 10336382 (+) True G26508
TU35442 lncRNA upstream 115160 10309674 ~ 10310003 (+) True G26505
TU35441 lncRNA upstream 131035 10293775 ~ 10294128 (+) True G26504
TU35424 lncRNA upstream 149726 10259072 ~ 10275437 (+) False G26494
TU35470 lncRNA downstream 13468 10479022 ~ 10479361 (+) True G26530
XR_005638795.1 lncRNA downstream 194015 10659569 ~ 10660575 (+) True LOC120556100
TU35560 lncRNA downstream 305405 10770959 ~ 10771999 (+) True G26605
TU35603 lncRNA downstream 413388 10878942 ~ 10879304 (+) True G26634
TU35605 lncRNA downstream 435074 10900628 ~ 10900858 (+) True G26636
XM_039794699.1 mRNA upstream 328524 9861152 ~ 10096639 (+) False lrrk1
XM_039794701.1 mRNA upstream 328524 9861152 ~ 10096639 (+) False lrrk1
XM_039794700.1 mRNA upstream 328524 9875792 ~ 10096639 (+) True lrrk1
XM_039794702.1 mRNA upstream 328524 9899924 ~ 10096639 (+) False lrrk1
XM_039795993.1 mRNA upstream 566479 9814697 ~ 9858684 (+) False aldh1a3
XM_039795167.1 mRNA downstream 18909 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 62284 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 276156 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 324291 10789845 ~ 10840149 (+) False shcbp1
XM_039795095.1 mRNA downstream 324299 10789853 ~ 10840149 (+) False shcbp1
TU35313 other upstream 565163 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 820727 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1269820 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1664862 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4135387 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1566067 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2644203 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2769681 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 4975923 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5009610 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile