RNA id: TCONS_00073556


Basic Information

Item Value
RNA id TCONS_00073556
length 2451
RNA type mRNA
GC content 0.37
exon number 11
gene id XLOC_037384
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 42546504 ~ 42650623 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTTTAGAAAAATATCgagtaaaataatatgtactgtcgtcatggcaaagataaaataattcaggagggctaataattctgaattcaactgtaacAATATTGAGATGTGTAGTATTGGTTTGCATCACCTCTATCCTGGCCCTTTAAACCTCCAGCTGGTCGGCGAGACTCCTGCGGTGGCATTTAACTGAGTGGCTGACGTCACTAAACTTTCCAgcgggctgtgtgtgtgtggaagatgAGAGAGAGAGCTCGAGTGTGTAGAAGACAGCGTGTGCGAGCACTGCTGAGGAGGACGAGCGGAGGATTCCTGCTTTTTTTCGGTAGAGGTGGCACATTCCACGAAATCGCAGCTGAGACGGAGCGTTTTCAAGCATGAACCGggcatttaacagaaaaaaagATAAATCATGGATGCACACTCCAGAAGCACTGGCCAAGCATTTTATACCATACAATGCCAAGTTTCTAGGAAATACAGAAGTTGATCAACCTAAAGGTACAGAGGTGGTGAAAGATGCCGTCAGAAAGCTCAAGTTTCAGAGACATATTAAGAAGTCAGAGGGACAGAAGCTTCCAAAAGTGGAATTACAGATCTCCATCTACGGAGTAAAAATATTAGATCCTAAATCAAAAGAAGTGCAGTACAACTGTCAGCTCCACCGGATATCCTTCTGTGCAGATGATAAGACAGACAAAAGGATATTCACATTCATTTGTAAAGATTCAGAGTCCAACAAACATCTCTGCTATGTGTTTGACAGTGAAAAATGTGCAGAAGAGATCACTTTGACCATCGGTCAAGCATTTGACTTGGCATACAAGAAGTTTCTGGAGTCCGGGGGAAAAGACGTAGAGACGAGGAAACAGATAGGTGGTCTACAGAAAAGAATTCAAGATCTTGAAACTGAAAATGTAGAGTTGAAGAAGCAGTTACAAGTGTTAGAGGAGCAGCTGATGATTGCTCAAGTTCCTCCTGGAAACAGCATGTCTTCAAAAAGCCCCACAGACATATTTGACATGGTTCCGTTTTCTCCAATGACTCCATTGGTTCCGTTACCAGCAAGTAATGGCTCGGCCCCTCCACCCCCGGCAAGACCTACAGAGATTAGGAGAGACCTGTTCGGTGCAGAGCCATTTGACCCTTTCACCTGCGGGGCGGCTGACTTTCCTCCAGACATCCAGTCTAAGCTGGATGAGATGCAGGAGGGGTTCAAAATGGGACTAACAGTAGAGGGCACTGTCTTCTCCCTGGATCCACTAGAAGGTCGCTGCTGATGCCAAGAAGAAAGTTTTGTCACTTTCATGTTAAACCATTTGTATTAAAGTGCCAAACTCGGGTTTACAGTCAAGATGTCTTATctcatgtttttttatgtatttgcattttgaatttggtttacaaaaaatatattggGAAATCCGAAGCAGTAGATGACTATTTTTGTAAGAACTAAAACATAAAACTGAACGAGTAATGTACCTGTAGTTTTAACTGCCCTTGCTTGTACAGACGATGAAGGATGTAGAAAGTATGTCCAGTTGCACagtctgtgtttgttttcataACAGTTATTAATCTCAGATTCTTTAAGCTTGTGTTAcacattacaaactctttggcATATCGCAGTTAATAAAACTCAGAAAAGGGAGAGTTTCCTGTACATTGTTTTATAACTTCATTTTTAACACTTATCGTACGTCATAATCACACTCCTTTTGTATTAGATCACTTGTAAAatgataatattgtttttatttgtagcaATGGATCcatttaaaacagtattttttaacTAAAAGCGGTGTCATGAATGGCAGAACTGGACGATTTCCACAATAACACGTACTTGTAATGCAGtttgattttatattatatattttagtatacTCTTGCACAAGGAAGCACTTTGGAAGAGCTCTGTTcatgtattattgttaattctgttTGTAAGCATTATTTTAGCCTTTGCTGTTGTAGTCATTAAAAGAAAACAGTATATACTCTGAgtatttttgtgtcatttttttatttttattttatctgcaTTAAATGAGACCCTGGATCTTTTTCCCTCTAGAAATCTTAACTTCAAAAGTAATTTATTTCAAGTGGAAGACCATTTTGTTTAATATCAGTGTAAAAGTATGGTagtattacagtaaaataatcatGATTTACTAGAATGCTATTTTGATTTCTATGCAAAAAAacgtgtgatttttatttattttattttcaaatataaagggcacctatattaaaaattatcttttgtaagctgtttggacagaactgtttgTAGTGTGTCCACTTTCATATTGGAGTGATCTGAACccaacaagtgtttttttttattattattattttttttttatttcctgacgttaTAATAGAGATCCAAATCCAAGTGACTTTGAggctatatataaaaaactatatata

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0006915 apoptotic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-21 Predicted to act upstream of or within apoptotic process and phagocytosis. Predicted to be located in cytoplasm. Is expressed in immature eye; midbrain; notochord; and pharyngeal arch. Orthologous to human GULP1 (GULP PTB domain containing engulfment adaptor 1).

Ensembl:

ensembl_id ENSDART00000192224

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075181 lncRNA upstream 46220 42348958 ~ 42500284 (+) False XLOC_037383
TCONS_00075182 lncRNA upstream 46220 42458099 ~ 42500284 (+) False XLOC_037383
TCONS_00075183 lncRNA upstream 46220 42458131 ~ 42500284 (+) False XLOC_037383
TCONS_00075184 lncRNA upstream 46220 42491425 ~ 42500284 (+) False XLOC_037383
TCONS_00075185 lncRNA upstream 46220 42497196 ~ 42500284 (+) True XLOC_037383
TCONS_00075186 lncRNA downstream 81576 42732199 ~ 42905622 (+) False XLOC_037385
TCONS_00075187 lncRNA downstream 82368 42732991 ~ 42901537 (+) False XLOC_037385
TCONS_00075188 lncRNA downstream 82369 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00075189 lncRNA downstream 244220 42894843 ~ 42901537 (+) True XLOC_037385
TCONS_00073563 lncRNA downstream 1147520 43798143 ~ 43801464 (+) False XLOC_037388
TCONS_00073555 mRNA upstream 275544 42270043 ~ 42270960 (+) True XLOC_037382
TCONS_00073554 mRNA upstream 275771 42269059 ~ 42270733 (+) False XLOC_037382
TCONS_00073553 mRNA upstream 381760 42157578 ~ 42164744 (+) True XLOC_037380
TCONS_00073548 mRNA upstream 419276 42066030 ~ 42127228 (+) False XLOC_037378
TCONS_00073562 mRNA downstream 1147279 43797902 ~ 43880326 (+) False XLOC_037388
TCONS_00073564 mRNA downstream 1149206 43799829 ~ 43883267 (+) False XLOC_037388
TCONS_00073567 mRNA downstream 1384167 44034790 ~ 44088067 (+) False XLOC_037390
TCONS_00073568 mRNA downstream 1384174 44034797 ~ 44088067 (+) False XLOC_037390
TCONS_00073569 mRNA downstream 1384367 44034990 ~ 44080500 (+) True XLOC_037390
TCONS_00073552 other upstream 421120 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 451327 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073545 other upstream 508185 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073540 other upstream 812894 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073538 other upstream 863494 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073560 other downstream 680772 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073561 other downstream 1124628 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073566 other downstream 1204872 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073582 other downstream 2281552 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 2345646 44996269 ~ 44997423 (+) True XLOC_037398

Expression Profile

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