RNA id: XM_039795174.1


Basic Information

Item Value
RNA id XM_039795174.1
length 5995
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC120555952
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15393784 ~ 15418775 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCCTCTATGTTCAAGGAACACCGCTTCATACATACACTGTTGTTAGCGACGTAGCCTCCACGGCCAATTTCATTTTTGACATTTCTATTTGAGACCACTTCTCAGAACTTCACTTTTTGTCACGGACAGGTGAATGCACGAATAGCGGTTTACTGGTTGGATCCCGGTACACTGGTGTGTCAAATTGTTGCTGGTGGCAGTCCTGCGAGCCCATTTGAGTATGCATATACAATGAAGAGGCGTGTGGAGGACCAGGAACCAATATTTGCACCCCAGCAACAGCAAACACGTCGTCCCCCAGTTCAAGGCATTGCAGACAGCTTCCAGCACCGGGCCCTCACCCCGGCCTCTACTGTGATAGAGGCAGCTGCAGACAACATGCAGCCATCCACAGGCATCCAGTATTCTCTCCCCCAAGGCTACCAGGTGCCTACAATGCCTCAGAACGCAAGTGGACACGGACATGGACATAACAATACTGCACCTCATGTTGGTCCCCATGCACACAGCCTGGCAGTTCAGTCCCAGGGCCCTGCATTGGTCCAAGGTCACGTTCATCCGCCTGCACCCATGACTTCAACCCAAGGACAGCAGTTTCAGCGACTGAAGGTTGAAGATGCCTTATCCTATCTGGATCAAGTGAAGCTGCAGTTTGGAAACCAGCCACAAGTTTATAATGATTTCCTTGATATTATGAAAGAGTTCAAGTCACAGAGCATAGACACTCCTGGAGTCATTAACCGTGTGTCCCAGCTCTTCAAGGGCCATCCAGACCTCATTATGGGATTTAACACGTTCTTGCCACCTGGATATAAAATTGAGGTTCAAACCAACGATCTAGTCAATGTGACCACGCCAGGTCAGATCCACTACATCACCCCTCATGGTATTTCTGTTCAGAACATCCCTATAAGTGGAGCATCCAGCCAACCTGCAAGCCACAACCAGCACCAGAGTCTGCCACAGGCGGGTCCGCACActacccccaccaccaccaccaccaccaccaccccacccacccccacccccacccaacCTGCTCCCAAACAAACCAGCAAGCCAATTCAGTCTCCAGCCCACACACCCACCAGCCAGCCCAACCCATCCATCCCATCCTACGCCTCACCGCGCTCACCGTCGGTTCAGTCCCACACTCCTGTGAGCAGCACGCCGTCCAGTGGGCCACCTCTCCAGAACAACCAGCCTGTGGAGTTCAACCACGCTATAAATTATGTCAACAAGATCAAGAACCGCTTCCAGGGTCAGCCAGACATCTACAAAGCCTTCCTGGAAATCCTTCACACATACCAGAAGGAACAACGAAATGCTAAAGAGGCAGGAAGCAACTACACCCCAGCACTGACTGAGCAGGAGGTCTACACTCAGGTGGCACGCCTCTTCAAGAACCAGGAAGACCTGCTCTCAGAGTTTGGACAGTTCCTGCCAGATGCAAACAGCTCAATGCTGCTGTGCAAGGCTACACCAGACAGGGCCGAGTCGGTGCGTAATGATCATGGCGGCACAGTAAAGAGACCCTTAATGAACAGCAAACAGAGACTGAGCCAGAATGGCATGCCAATCAGGAGACCTGCTGGAGTGGGAGCCACGCCGCCTGTCAAGAAGAAGCCCAAAATATTGGGGAAGGACCATGGCATGACTGAAGTCAGCAAACACAGCACCAGCACTGAAACTATGTTCTTTGAGAAGGTTAAGAAGGCTCTTCGGAGCTCTGAGGCGTACGACAACTTCCTGCGTTGTCTTCACATTTTCAACCAGGAAGTGATCTCTCGTGCCGAGCTGGTCCAGTTAGTCATCCCATTTCTTGGAAAATTCCCGGAGCTATTCACATGGTTTAAAAACTTCCTGGGCTACCGAGAGTCTAGTCACGGGGAGTCGAGCCACGCAGAGAGTTTACCCAAAGAGCGTGCAACAGAGGGCATCGCCATGGAGATTGACTATGCTTCCTGTAAGAGGCTGGGGTCCAGCTATAGAGCACTGCCGAAAAGCTACCAGCAGCCCAAGTGCACAGGAAGGACGCCGCTGTGCAGAGAGGTTCTGAATGACACGTGGGTGTCGTTTCCTTCGTGGTCTGAGGATTCTACCTTTGTGAGCTCCAAGAAGACTCAATATGAGGAGCACATTTACAGATGTGAAGATGAGCGCTTTGAGCTGGATGTCGTGTTGGAAGCCAACCTTGCCACGATACGAGCCCTGGAGGCAGTGCAGCGGAGGCTTTCTCGTATGTCTGCTGAGGAGCAGCTGCGCTTCAAGTTGGACAACGCGATGGGCGGCTCCTCAGAGGTCATTCACCGCAAAGCTATCCAAAGGATATATGGCGACAAGGCCCACGACATCATCGACGGGCTCAAGAAAAACCCAGCTGTGTCTGTTCCCATCGTGCTGAAAAGATTAAAAATGAAGGAAGAGGAGTGGAGAGAAGCCCAGAGAGGCTTCAACAAAATCTGGCGGGAGCAAAACGAAAAGTATTACCTGAAGTCACTGGACCATCAAGGCATCAACTTCAAGCAGAATGACACCAAAGTGTTGCGTTCAAAGACCTTACTCAATGAAATTGAGATGCTATATGATGACCACCAGGATCGTGCATCTGAGGAAACTGCCACACCGCCACCGAGCGGCCCACACATCACCCAGTGCTACGAGGACAGCCAAATCATGGAGGACGCTGCCGCCCTCATCATTCACCACGTCAAACGACAGGTGGGCATCCAGAAAGAGGACAAGTACAAGATCAAGCAGATCATCCACCACTTCATCCCTGACCTGCTGTTCGCACGGCGAGGTGAGCTCTCCGatgttgaggaggaggaggaagaagacgaCACGGAGATGGATCCAGGCGGCCCCAAGAAGCACAACGGCCTGCCAGGCAGCAGCCCGTCGAAGTCCAAGCTCCTCTTCAGCAACACGGCAGCTCAGAAGCTGCGAGGCACCGATGATGCCTACAACATGTTCTTTGTGAACAACTACTGGTACATCTTCCTTCGTCTTCACCACATCCTCTGTTCTCGTTTGCTGCGGATCTACGGGCAAGCCGAGAAGCAGATTGAGGAGGACGCCCGTGAGCGAGAGTGGGAAAGAGAAGTGTTGGGGCTCAAAAGGGAGAAAAATGAAAATCCAGCAATCCAACTGAAGATGAAGGAGCCAATGGATGTCGATGTAGAGGATTATTACTCAGTTTTCCTGGAAATGGTGCGTAATCTTTTGGATGGAAACATGGAGCCGACTCAATACGAGGACTCCCTGAGGGAAATGTTTACTATCCATGCCTACATCGCCTTCACCATGGACAAACTCATCCAGAGCATCGTCCGGCAGCTCCAGCACCTTGTCACTGATGATGTATGTACGCGCGTAACGGACATGTACCTGAGCGAAAGTGCCAATAAAGCCACGGGGGGCTTACTGTCCACGCAGACGTCCAGGGCCACAGCAGAGGGGACCTACCAGCGCAAAGCGGAGCAGCTTATGTCGGATGAGAACTGCTTCAAGTTGATGTTTGTAAAGAGACGAGGATCTGTCAGCCTGGCCATGGAGCTGCTGGACACAGAAGAGGAGAACTCTGATGAGCCAGCGGACTCAGAGAGGTGGTCAGACTACGTGGGTAGATACCTGAATTCAGATTCTGCATCCCCAGAGCTGCGTGAGCATCTGTCCCAGAAGCCGGTGTTCCTCCCCAGGAATTTGAGACGGATAAGGAAGTGCCAGAGAGGATGGGAGCAACTGCAGCAAGAGAGAATGAACAAGGTCCCCTCGGACAAGTCGCAGGACGGCACCAGCGAGCTAAAGATGGAGTGCATGTTCAAGCTCAACTCCTACAAGATGGTCTATGTCTGCAAGTCGGAAGACTATATGTACAGGCACACCGCACTCACACGAGCTCATCAGTCCCAAGAGCGAGTCAACACGCGCCTGCACCGACGCTTTCACGCCTGGCTGGACACATGGGCCAAAGAGCACGTGACCAGCGACATGGCTGCCGACAACCGCAAGTGGCTGATGGGAGAAAGACGAGAAGGCCTATTGCCCTGCACCACTAGTTGCGACCCGGAGGTCCTCCATTATATCACCGTTAACAAGTACCGGGTGAAGTACAGAACACTGTAGTCTCCCTTTTATTGAAAGATAAACTGTGGCAGTGACTGTCTTCACACAACAAACTGCCAGTGTTGACTTTATATACACAGTAGCTTCATACCGATTTCTACAACCTGCTGTTAACTGGATTCCGTTGCCAAAACGTTTGTGTCAGAACAGATTCAGGAACTTTGTCCAAACTTTCAAGCTTTTGCTGCAAATTCTGCAATGTATATGAACTAGAAGTTTTGCAGGTGTCActatatgaagaaaaaaaaacaaaaaaaaaaccctgcttGTCTCAGAATCTCCATCGTTATTATATTAAATGCAGATTTTTACATGAGATGAATATACAGAGAAAACACTCACTCACTTCTTCTCTTTGGAGCAATTCACagttgaaacacacacaaaaaagatggTTAAACATTTCATAACTAAAACTAAACAATGAAATACGAGTTTTTCGAGAACCACAACATTTTACAGaaaattacaacaacaaaacatctcTGGCCTCTGCCGGGTAGATGCCTGGCGTCGGTACAATTCCAGCATTGTGTATCAAGTACAACTATGTATGACCACCCAAGCATTTAGTGTAAATATGTGTTTATAtcaagattttcttttctttcttttttttatccgatGTCATTGATGTGTAGCGtatattaaaacacacacagtatcagTCTTTAGCTAGAGGTTGcagacaaaatgcaaaattgtaacctttttttttttttttttttttttaccaaaggaTATTAGAGAGCTTTTTCGTTTGTGGTTTGTAGAACGTGTTGTCCCTAAAGTCTTCGTTTAGTAGAAAAATGACTCCTCTTATACGCGCTTCGACCCCTTTCTGCGCATTTCTACCTTGAGTCTTTGGCATTAGTATCACTCGTGGTTTTAAGGTGATTGAATGTAGCTGAGCAGCAATttctcttatttttattttttttgaaagtacagtatgtgtccGTTTGTACTGAAATCTAAACAGTACTATCAACTTTTTCTTGTGTTTAAACTTTACCAAATGGTTGGAATCGGTATGACAGGTTCAGGGCTCTCGCAATGTGTCACCCTGTACAATAGTTGGTGTATTTTTTATGCCCAGTGTTGGCGACAAACACTGACTGATGTATAGAAGGTCAATATGTGAACGTCAGCCTTGTGACTTGTGTACAGTTTAAAGATTAAGAAAACAAGcaagcaataataataattcattttgAGGCAGTTTATCAAAGCTATCAGTTTGTATTTCTTGCTGAAATACAAATGTGAATGTTGTATTCCCTTAAAAGAGGGATGTAAACTAAGGATTTTTATTGCCTTTTCCCGTCTGCAGTTTGTTTAATAAAACTGTAATTGGCCCTGTAGATATTGTAGGTAATGTAAGCTGGAGATGGGAAGATATCCATCACGCTAAATGCGAGTGTGTTTTACAGCGGAAATCGACATATAAGCAACAGgcttttgttaacattaacttTAGGAACACATTCAGATctttattatctttattatttttcacatatGGTTCATAACATGAGCAGGATGGAAGCAAACACACCAAATGTTTAGGATAGAGATGCAGATTGGCAAAAACGAAAAAGCTGCCCGACTACATTTCATGCTCCAAGTAAGGCACTGGTCGGTAACATAACCAGCTACAGACAATCTTGGAACAGTTTATTActtgggtttttatttttatatttactaTGTTTAATATGGAATACCACAGGAAGTCCCGGGGAGGTGATTGTACATAAAGACATTGTTTGTACCTTGTTTTAATGTGTCTATTCTCTTGACTTTTATGATGTTGTACATGAGTGTTAGTATGGTGTTCGGCATTAAACTATCCTTTAAATAGA

Function

GO: NA

KEGG:

id description
K11644 SIN3A; paired amphipathic helix protein Sin3a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36562 lncRNA upstream 328275 15062219 ~ 15065509 (+) True G27459
TU36556 lncRNA upstream 340165 15047877 ~ 15053619 (+) False LOC120556271
TU36558 lncRNA upstream 340165 15047877 ~ 15053619 (+) True LOC120556271
TU36557 lncRNA upstream 340165 15050283 ~ 15053619 (+) False LOC120556271
TU36548 lncRNA upstream 376279 15016584 ~ 15017505 (+) True G27449
TU36704 lncRNA downstream 105199 15523974 ~ 15531915 (+) False G27565
TU36705 lncRNA downstream 105199 15523974 ~ 15530314 (+) True G27565
TU36708 lncRNA downstream 115228 15534003 ~ 15535415 (+) True G27566
TU36709 lncRNA downstream 126716 15545491 ~ 15545779 (+) True G27567
TU36710 lncRNA downstream 127669 15546444 ~ 15546655 (+) True G27568
XM_039795409.1 mRNA upstream 1451 15374188 ~ 15392333 (+) True LOC120556051
XM_039795407.1 mRNA upstream 1451 15374188 ~ 15392333 (+) False LOC120556051
XM_039795408.1 mRNA upstream 1451 15374188 ~ 15392333 (+) False LOC120556051
XM_039795411.1 mRNA upstream 19712 15362199 ~ 15374072 (+) False taldo1
XM_039795410.1 mRNA upstream 19712 15362200 ~ 15374072 (+) True taldo1
XM_039796045.1 mRNA downstream 22680 15441455 ~ 15446492 (+) True LOC120556433
XM_039795275.1 mRNA downstream 56372 15475147 ~ 15486451 (+) True LOC120556001
XM_039795276.1 mRNA downstream 56375 15475150 ~ 15486451 (+) False LOC120556001
XM_039795277.1 mRNA downstream 56382 15475157 ~ 15486451 (+) False LOC120556001
XM_039795278.1 mRNA downstream 56386 15475161 ~ 15486451 (+) False LOC120556001
TU36145 other upstream 2155965 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2283445 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3362056 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 5533784 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5789348 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 22702 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 56389 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2305773 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3143120 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4068471 19487246 ~ 19487533 (+) True G28581

Expression Profile