RNA id: XM_039795177.1


Basic Information

Item Value
RNA id XM_039795177.1
length 731
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC120555953
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15418952 ~ 15427599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagaggagagagggagagaaagagcctgaagaaaagagaaaggggTAGACGGACGACAGGAGACGAAAGGCTGACACACATTGAAAACCCCCACAAGAAAAATGCCCAATTTTGCAGGGACATGGAAAATGAAAAGCAGCGAGAATTTCGAAGATTTGCTCAAAACCCTGGGTGTGAATGCCATGCTGAGGAAGGTAGCGGTGGCAGCTGCGTCCAAGCCACATGTGGAGATAAGACAGAATGGCGAGCACTTCTACATCAAGACTTCTACCACAGTCCGCACCACGGAGATCAACTTCGTCATTGGAGAGGAGTTTAATGAGGAGACGGTGGATGGCAGAAAGTGTAAGAGCTTGGCCACCTGGGAAACAGAAAACAAGATTTACTGCAAACAGACTCTACTGAGCGGGAATGGCCCGAAGACCTACTGGACCCGAGAACTCAGCGGGGACGAACTCGTACTGACTTTTGGAGCCGATGATGTGGTGTGCACGAGGATCTACATACGAGCATAGCAGAAGtacccaatttcaattttcaacAAATAATGTCTCAGTCTCTGAACTGTCAGTGCAGAAATTCACATGAAAATCAACATCTCAAATAATCTGTTTTAAGTCAATGTTTTTGCATCTTCATGAAAAATCACAATTTCAGATGGATATCACTGCTTTTCTCCCTTTTTGTATATCATTTTTCAAGAATTGGAAATTAAACGATCAAATTAT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K17337 CRABP1; cellular retinoic acid-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36615 lncRNA downstream 44861 15362034 ~ 15374091 (-) True G27499
TU36613 lncRNA downstream 44861 15373495 ~ 15374091 (-) False G27499
TU36611 lncRNA downstream 237932 15180739 ~ 15181020 (-) True G27497
TU36605 lncRNA downstream 264837 15149500 ~ 15154115 (-) True G27493
TU36572 lncRNA downstream 365191 15050662 ~ 15053761 (-) False cfap70
TU36673 lncRNA upstream 16727 15444326 ~ 15446509 (-) True G27545
TU36688 lncRNA upstream 47654 15475253 ~ 15482686 (-) True G27551
TU36690 lncRNA upstream 51707 15479306 ~ 15505668 (-) True G27552
TU36692 lncRNA upstream 55511 15483110 ~ 15486465 (-) True G27554
TU36724 lncRNA upstream 106401 15534000 ~ 15535337 (-) True G27582
XM_039795901.1 mRNA downstream 62893 15181720 ~ 15356059 (-) False tspan4a
XM_039795900.1 mRNA downstream 62893 15181720 ~ 15356059 (-) False tspan4a
XM_039795898.1 mRNA downstream 63637 15181720 ~ 15355315 (-) False tspan4a
XM_039795897.1 mRNA downstream 98909 15181720 ~ 15320043 (-) True tspan4a
XM_039795748.1 mRNA downstream 340122 15053628 ~ 15078830 (-) False cfap70
XM_039795916.1 mRNA upstream 5823 15433422 ~ 15437488 (-) False LOC120556362
XM_039795918.1 mRNA upstream 5823 15433422 ~ 15436793 (-) False LOC120556362
XM_039795919.1 mRNA upstream 5824 15433423 ~ 15437488 (-) True LOC120556362
XM_039795988.1 mRNA upstream 96745 15524344 ~ 15532010 (-) True LOC120556400
XM_039795399.1 mRNA upstream 109375 15536974 ~ 15578092 (-) False csnk1g1
TU36517 other downstream 575047 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 948607 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2129688 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2323186 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 3114128 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 212170 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2080524 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2082351 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2082529 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2790523 18218122 ~ 18220550 (-) True G28121

Expression Profile