RNA id: XM_039795191.1


Basic Information

Item Value
RNA id XM_039795191.1
length 3416
RNA type mRNA
GC content 0.41
exon number 5
gene id mettl15
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23105221 ~ 23158790 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACTTTTCACATGTGTGTGCGCTCAAACCCAATATTACGGAAAACAAATCTGGCTGTTTGGGGAGCATGGAGGTCATGGAAGTTAAGCCTGCACTCTTCTACAGTTTGTGCATCTTCTGGTCCTGGTCCCCTGGACAGATCTGAAGAACTGTCCTCTGTATCAGCTGAAAAGCCTCCTCACACGCCTGTGATGCTTAAAGAGGTGCTTCATTACTTAGACATCAAGCCAGGTCAGGTGGTCCTGGATATGACATTTGGAGGTGGTGGTCATACCAAAGCAATACTGAATATGGTTCCTGAAGTCACAGTCCTGGCCTTAGACCGAGATCCTACAGCCATTTCTCTGGCCCAGCAGTTAGCCAAGGAATACTCTGGTCGTGTGAAACCATTGCTTGGGCGATTCAGCGAGCTTGAAGCCCTGCTGTCTAACATGAACATTAAGCCAGGCAGCATTGATGCTGTCCTGTTGGATGCTGGCTGCTCCTCCATGCAGATGGATCAGGCAGAAAGAGGCTTCTCCCTCAGCAAGGATGGGCCCCTGGATATGAGAATGGATGAAGAGAGGTACCCCGACATGCCCTGCGCTGCTGACGTTGTGAATACCTTAGATCAACAGGCACTTGCATCCATCCTCACTGCATATGGGGAAGAAAGACACGCCAGGAAAATAGCTTCAACCATTGTGGAGGCACGCCGTGTCAGCCCCATCACCCGGACACAGCAGCTGGCCAGCGTGGTCGCAGGATCGTTTCCTGCAGCTGTCGTCTATGCACGCAAGGACCGCCTCCATCGACCTGCACACGTGGCCACTAAGACTTTCCAAGCTCTGCGTATCTTTGTGAATGATGAGCTGAACGAACTACATGCTGGGCTGCGTGCTGCCCGGGCGGCACTGACACCTGGAGGACGTCTGTGCGTGATCACCTTTCATTCACTAGAAGACAGGCTGGTCAAACGTTTCCTCCAGGGAGATGACTTGTCTAATCTAGATCGGTATCACTTCAGCCCGAGAAAGCAAGGCACCGGGAAGGAAAAACTGGTGGATGAAAAAAGAGATGGTGGAAGCGTTTATTGGCTTCCTCTGCGAAGAAAAGTGATCGCCCCAGAAAAGTACGACGTAAAAGAGAATCCTCGAGGACGCTCCGCTAAACTGAGGGCGGCACTCAGACGTTAATTATGTGACCTCAGTTATGAAATAACAGGAAATCTCTCTTTTCATCCAAACATTTGAGCTGTTTTACAGCCAGAGTAAGTCATACTTAAAGCAAGTTTGGCAAAGGGTGTCGATGCAGTTACATAATAACTCTCCACTGTATTTGTCTGCTGTGGatgctatttttcttttttctcattaAATTGTTCCATAGAACACAATTGGTGGGAAGCCAATGAGGGTTGTCGTCCTTGATGCTGCATCAGTGGTTGGCTTGGGCACTGCACATTGAAGAGGGAACTCTGGGTAAGAGACAGAATGAATCTCCCACACAATATTCCCGCTGGttggatttttttatattttttcattgaCCGGTGAAAAAAATTATTGGCGGCACCGTGCGTCACAAATTTTGCAAATGTCTACAGTAGTTAGCAGTGACAAAGACTTTTCAGACTTTCCAAATTGGGATAAAAACAGGCATCAAATACAAagaaatgtatgtatatatgtaactAAGTAATCTAAACTCAAAGGTCCACTCACAAGCTTTCACTTTGATCTTAATGTCAATTCAATGAGCGAATCAGGCTGGTTCATGTGTCGTCTAGGACCTTTGGTCATGTAATATTACATTGTTCCACATTCCTGATTCAGCTCCATTCACTGAATGAAGATGTGTAAGATGTGGTTAAGGGCTCTGAAAGCTAGTAAGCGGCCCTTTGATTCAAGCTAATTTTTGCTATATAAACTGTTCCCAAAGGTCGAGAATGAATATGCAATTATGAATTAAATGAAGATACAATACTAATTAGAAACAGCTGATTATGTTTAATTTAATATATATGCTTAATTTTTGGctttcagaagaaaaacatcTAATTGAATTAAGAGGTTTTCACTTCAATATCACTGGTGGGCAGCAGTCTGTCTTTCACCTTGCCCTAGCACTGATAAACCTGCCCAAACGCAAGTGAGAACAGCTGGTTAAAGTTTGAAGTGAAACTTTTTATACCCAAGTAAAACTATGTGACGTTTGTGTTGTTCGCCttttatattataaaatgtacagaaaagttgttttttattattattattattttacacctCTAGTTTGATACAGCACTGTTATGATCCTGTACAGTACTGTATTTGAGTTTGAGTGATGAATTTAACCATCTGGGGTCCGAGGGTGTTTTCAGACACACAAATGATTTTGGCATGTTCTGATGTTGTTGAACATCTCTAAGCAGTATTTTCAAAGTAccattatttttgtttgtattcaGTACAAGTTCAGCTACAATAATGTCTAAGTAGAATGAATTTCATGATTGTACCTTTGTTTTAAACttcagggttttttttgtgtgctatTCGAAAAAAAGGGTATTTCCTTGCATTGCCCATGTTTGACTGCATATTTGGTGGTTATTGCAGCAATATATCTCAACATATAACATAAAAAACACCTTTTCTAATTGACGTCTGTATTTCCCCTGAACCTTGCTTGATGAGTCGCTCAAGTAAAACTCTACTGTACCATATGAATCAGTAATGCCACTAAATACTGAATGACGCAAGTGTCAGAAGTGGTGCTAAATGAGCTAGGTGGTTGTTCTTGATCATTCTCTCACCTTCAACTGTAAGTAGAGGAGTTGGTTTGATCTTTACTATTTGGCTTTGACTAATTGTAATTACTCCATCAAGATTATTAACACTTTTTTCGTCTGTCTCAGTTTACTGCACTCTAAATATACCCTTCTTATTACCTTGGAAACTAAATGGTGCAAGTTACATTTAACTGTGTCTAAAATTATATGCTGTTTTAATCTAATATGAAATGATGCCATATCGTTTGAATGCACCTCCCTTTTGACATCAGTGGATGTGGAATATGTCTCGGTTTTATATCTGAATCACACTTTTTACCATTTATGGTAAGAATATGTTACTCACGACTGCATTTCACACTGATGCGTTGAAGTGTTAATATAAATAGAAAAGAATAAAGCAACATGGGAGAGATGTAAATTTTTTAAGAGAACATATTCACTGGAAATGGGATTTCTTCTGACAAGATTGTCCTTCACATTTTTAAGTGGCCTTTTATAATGTCGCCATTTTACGTACTGTAGTCAAGTACTGCAGGCAAAGTGGAACTCCGCTGATTTTACACAggaaagtctgtttacaggtcttggggAGTACGACTACATATGTGAATAAAGTAGTTTGAAgacttttttgttttcaga

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K03438 mraW, rsmH; 16S rRNA (cytosine1402-N4)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38893 lncRNA upstream 17545 23045293 ~ 23089580 (+) True G29271
TU38881 lncRNA upstream 82371 23021429 ~ 23024754 (+) True G29262
TU38836 lncRNA upstream 87747 23016032 ~ 23019378 (+) True G29228
TU38839 lncRNA upstream 87747 23016032 ~ 23019378 (+) False G29228
TU38854 lncRNA upstream 99143 23004878 ~ 23007982 (+) True G29243
TU38912 lncRNA downstream 1161 23159951 ~ 23160396 (+) True G29288
TU38918 lncRNA downstream 1803 23160593 ~ 23160917 (+) True G29294
TU38953 lncRNA downstream 128107 23286897 ~ 23294407 (+) True G29323
TU38969 lncRNA downstream 210390 23369180 ~ 23374096 (+) True LOC120555420
XR_005638711.1 lncRNA downstream 210552 23369342 ~ 23371897 (+) False LOC120555420
XM_039795689.1 mRNA upstream 92216 23012599 ~ 23014909 (+) True mcee
XM_039795690.1 mRNA upstream 92216 23012599 ~ 23014909 (+) False mcee
XM_039794295.1 mRNA upstream 112961 22981783 ~ 22994164 (+) True LOC120555548
XM_039794978.1 mRNA upstream 146722 22945044 ~ 22960403 (+) False LOC120555841
XM_039794303.1 mRNA downstream 60399 23219189 ~ 23254585 (+) False lgr4
XM_039794304.1 mRNA downstream 70118 23228908 ~ 23254585 (+) True lgr4
XM_039795217.1 mRNA downstream 169820 23328610 ~ 23343208 (+) False slc39a13
XM_039795218.1 mRNA downstream 169823 23328613 ~ 23343208 (+) True slc39a13
XM_039795219.1 mRNA downstream 186697 23345487 ~ 23354201 (+) True tmem276b
TU38851 other upstream 114623 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 225473 22764719 ~ 22881652 (+) False ankrd11
TU38802 other upstream 225759 22867720 ~ 22881366 (+) False ankrd11
unassigned_transcript_140 other upstream 559853 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38307 other upstream 1703675 21396213 ~ 21403450 (+) True G28826
TU39086 other downstream 568222 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 1076934 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 1292522 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 1292584 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 2805889 25964679 ~ 25964758 (+) True LOC120556589

Expression Profile