RNA id: XM_039795194.1


Basic Information

Item Value
RNA id XM_039795194.1
length 2409
RNA type mRNA
GC content 0.47
exon number 11
gene id zrsr2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18664507 ~ 18670988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTGTGTGCACACACCACCTCTTCCTCTTCCATTGGCAAAACAACTCCGCatgtagctaactagctaaaGTTTGCAACAAACAGAAAGTATTCATTTATATCACTTCTCTGACAAACCGAATCAACGTTTGAAATAGCTCGTCCAGTCAGATAATAGCTAgtcccatgttttttttaaactaaacgCGGATGAGAAGAAATAAcgaaggctaacgttagctgaacATGCTAACTAGTTAACgttaccattagctagctactgtTAGCTGTGATGGCAGCACCAACTCCTCCGATTTCTGCTACTGTGTTCAGTCAAAAGCAAAGGAGGGCTGCTctgaggaaagagagaagaaaacggAAACGCCAAGCTCTCGCCCAAGCCAGAGAACGTGGGTTAAAAATTGGAGCAAGCTGTAcacctgaagaagaagaagaagaagaaaaagaagaagaagaagaagaaaaaagaaatgatgaAGATGATAAGGATTATGATGTTGCGGAGCAGGAAAGACTGCGGCTACATGAAGAGTGGTTGGAAAGAGAGAGGCTTGCCCAGGAGGAGTTCAGGCTGAGGGCTGAGAGAGAGGAGTCtgcaaggaaaagaaaagaggaggaggagCGCATGATAAAAGAGGAATGGGAGGCCCAGCAGAAGAAAGAACAAGACGAAAAAGAGCAGAAGCAGCAGGACAAGCGAGACAGAGAGGAGGCCGTTCAGAAAATGTTGGATGAAGCTGAAAATCAGCTAGAAAATGGAGAACCGTGGATGAATCCCGAGGCTCCTGTGTCAAAGAACTCTGATAACTTTGGAACAGAGCGCGACGTagccaactgtccgttcttcctGAAGACTGGGGCATGTCGATTTGGAGACCGATGTTCTCGGAAGCACGTTTATCCCACAGCCAGCCCGACTCTGATGATTCGCGGTATGTTTACAACGTTTGGCATGGAGCAGTCACGCCGAGATGATTACGATATTGATGCTTGTTTGGAACACAGCGAGGAGGAGCTCCAGGAGTCTTTCCTCGAGTTCTACCATGACGTCCTGCCGGAGTTAAAGAGTGTCGGCAAGGTGGTGCAATTCAAGGTCAGCTGCAATTATGAACCACACCTGAGAGGAAACGTTTACATTCAGTTTGACACAGAGGAGCAGTGTAAAGAGGCCATCATCAAGTTCAATGGGAGGTGGTACGCAGGCCGGCAGCTTCATTGTGAGATGTGTCCAGTTACACGGTGGAAGAATGCTATATGCGGATTGTTTGACAGACAGAAGTGCCCCAAAGGGAAGCACTGTAATTTCCTGCATGTATTTCGAAACCCTGGCAACGAATTCTGGGAGGCCGACCGAGACCTGCACATGTCACCAGACCGCAGCGTCAGGGGGAGTCGCAGAGACGGGTGGCATTCAGAGCGATACGGAGACAGGTCGTGGCGGCAACGTCCCTGCAGCAGAAGCCCACCAAGATCTGAGAGATCCCACAGCAGACGAGAGGGCGACAGGAGaaggagcagagagaggagggCCTCCCAACAGCACAGAGAGGACAAACGGTCGTCCAGACACAGCGACAGGAGGACAGATTGGTATCGGAGCAGAAGTAGAGACAGGTCGAGGAGTCGAAGTAGAGACCGAGAGCAAGACAGGCCAAGAAACAGGAGTAGAGCTAAAGACAGGGAGCACAAGTATAAGAATAGAAGtgaagagagagacagtagaGACAAAGATACAGACACTCACGGAAGAGCAAGAGAGAGGTCAAAAAGCACAAGccgagaaagaaagaaacaaagtaGAGAAAGGAGCCCCAAGAAACCAGATACAAATGAGAAACCCACTAATGAGGATACCAACACACGCCGCCGCCACAAACAGTCCAAAAAGAGCAAGAAGAAGAGCAAGAAGAAGCATAAGAAGAAAAGCCATTTGCCAGAAGTGACCACCTCATCTGGAGAGTCAGAAAAGGAGAAGGAGTCAGAGGAAGAGACGGTGGAGAATCTCACTGTAACAAGTCCCGTTCAGGAGATAAAGGAAATAGAGCTAATTCAGAAAAACAACGATACGGATGAGAGTCCATGTGTTGACAGTGAAACGTTAGGTCCTGAGGTAAAAATTCAGCAATCTAACACAGAAATGCAATGAAATGAAGCTGCTGGAAAAACCTCTTAGGGGACACAAAATCTGTGAATTTATTCAGGCTTTTCTCCTTATAACTATGTGAATGTATGAGGAATACATTGCACGTTTTGAGCAGTGATGCAGTAAGGTAGCAGTCCTGTCACCaatatgtacatactgtatgtgaatatGTTGCTTTAATTATTGAACACTCGATCACCGGCGCTGCAGCACTTCAGTTATTGTTGCTGagtaaaaacaatattaaacaaGAGatcaacaaat

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K24273 ZRSR; U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37505 lncRNA upstream 48698 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 54629 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 219211 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 483306 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 745311 17918900 ~ 17919196 (+) True G28083
XR_005638784.1 lncRNA downstream 175281 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 383136 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 386558 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 400832 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 412219 19083207 ~ 19087001 (+) True LOC120555697
XM_039795743.1 mRNA upstream 517 18659862 ~ 18663990 (+) True LOC120556269
XM_039795745.1 mRNA upstream 517 18660644 ~ 18663990 (+) False LOC120556269
XM_039795134.1 mRNA upstream 21708 18639282 ~ 18642799 (+) False LOC120555930
XM_039795135.1 mRNA upstream 21708 18639431 ~ 18642799 (+) True LOC120555930
XM_039794522.1 mRNA upstream 59537 18585773 ~ 18604970 (+) True LOC120555641
XM_039795673.1 mRNA downstream 6353 18677341 ~ 18698498 (+) False phka2
XM_039795672.1 mRNA downstream 6368 18677356 ~ 18698498 (+) True phka2
XM_039795675.1 mRNA downstream 6368 18677356 ~ 18698498 (+) False phka2
XM_039795676.1 mRNA downstream 6368 18677356 ~ 18698498 (+) False phka2
XM_039795674.1 mRNA downstream 6368 18677356 ~ 18698497 (+) False phka2
TU37478 other upstream 96027 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 921773 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3178086 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3218115 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5426688 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 816258 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 826750 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 827105 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 841368 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 2040116 20711104 ~ 20761147 (+) True G28770

Expression Profile