RNA id: XM_039795195.1


Basic Information

Item Value
RNA id XM_039795195.1
length 2166
RNA type mRNA
GC content 0.40
exon number 5
gene id ap1s2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18671352 ~ 18676489 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGCACCGCTGACCTAAACGTTGTCTCACCACAACCGCTGTCCGCTAGCTAGTTTAGCATCAGTCTGGATCGAGAAGCTAACCTAATATCTTTCTAGTCTCTTTGGTTATGTATTTCGCTTGAATTTACTGAAGTTACCAGTCGTCCAAGCGACTACATTGAAGATGCAGTTCATGCTGTTATTCAGCCGGCAGGGAAAGCTGCGGTTACAGAAATGGTATGTGCCTCTGTCTGacaaggagaggaagaagatcTCCAGAGACCTGGTCCAGACCATACTGGCCAGGAAGCCCAAGATGTGCAGCTTCTTGGAGTGGAGGGACCTCAAGATTGTGTACAAGAGATATGCGAGCCTGTATTTCTGCTGTGCAGTCGAGGATCAGGATAATGAGCTGATCACCCTGGAGATCATCCATAGATACGTGGAGCTGCTTGACAAATATTTTGGCAGTGTGTGCGAGTTGGATATTATCTTCAACTTTGAGAAGGCCTACTTTATTCTGGATGAGTTCCTGCTGGGCGGAGAGGCCCAGGAGACGTCCAAGAAGAACGTGCTGAAAGCCATCGAGCAAGCTGACCTGCTGCAGGAGGAGGCTGAGGCACCACGGAGCGTTTTAGAAGAAATTGGGCTGACATAAATCATCATGCTGCTGCCTCGCAGTTCCTTCTTCCAGATACCGATCTGGCAACCTTCTTGTCTCTATCCTGTGTCCTCATGTTCACTGTCAGTGTTGTATGTATATAATCACCATCTATCTATGTGCTGTATTACTCTGTACTGTATTATCCAGTAATGTCTTTAAATGTGGTGCCAACTGTGGTTTTTAATGTCTCCTATGTACTATCTTCTCACTGTATTCTGCAGTACTATTGTCATACTTTACACCCCTAACTTACAGTACAATGTAGCGACCACATAAAAACTCCAGCATCATAATAAGATCTTCTATCATCACCGATTGCAAAGGGGAGGGGGTGTTCTGTTTGGCTTAAAGTACTTTGGGTGCTGTCGTAGCTGCAGTCGGTGCTTCTTATGAATTACCATCACACTCGAGTCACAAAGCTAATCATCCGAattcatgaaaaataaatactggCTGATCTGTGAAAAACCCAGAGGGTAGTTTTAATAAAACTATTATTCTAAATATTCTGTCCGCTGCACAAAAGAAAGGATGTTTCACAAGGGCAAAATATTATTGcattattttgttaaatatataatacgGCAATGAACCataaatatataacaatataactAATAATTATGGTGTACAAATTGAGCAAGATTTGTCATTTCTAACAATCACTTTTGGATTATAAAGAGGCCCAACATGGGAAATAGgttaaacatcttttttttttttttaatcatgcagAGGATGGAATTCTTTTTTTAGCCAGATGGTTAAAGGTTTAGAGGTTAGTCTTTGAGGACTCTAGTCTAGAAATATCTTCACAACAACAGTAACTGTTGCTAAATGACCTGTTGACCAATGATCTAAGAAAAGATCATtgggcatttcttttttttaaagaatctgAAGGTCAGCTCTCCGACTCAAACGTAATGGTAATACATGAGCGGCACCGACGGGGCTTGTGCTGTTGTGGGAATCACTGACGCAGTTATAGTCACACGGGTAAGTTCAATCCACCAATTAAGGGAAATTAAACCATTACCCATTATCAATATCCGTGCATGTTAAGGTCTGTACGAGTATGTGTTTCAAGATTCCCCTCCACGAATCAACCAtttcatttttccttttcaatgCTTAACTGATTACCTTAGTTAAACATGAGCAGTTGTTGCGTGTAATTAGTCtgtttgttaaaattgtcaTCTTGTCTTTTTCTGACAATGGATTTATTGTCCtgataaaaacatgtttaacattCAATTTCATAACGGCCTCTGGAGGTAAATCTAAGGTCAGTCTCTCCCTTAGTCTTAGGTCAGGAAAGGATAGCGACCCAAATAAACTATTTGATGTATTATACTTTGGCTTAAAGACTAACATatgaccaaagaactgtgttttACCTTCTCAATGGTGTCTATGGAAAGCTAACCTGGCAGAAAAGGGATTTAGAACTGCAGGATGTTTGATAGAAGATGTATGTGGGGGTTATTTGGCCACAATATACCAGTGTTACGTAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37674 lncRNA downstream 18911 18650051 ~ 18652441 (-) False LOC120556268
TU37650 lncRNA downstream 102275 18568101 ~ 18569077 (-) True G28309
TU37640 lncRNA downstream 113133 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA downstream 113133 18555965 ~ 18558219 (-) True G28302
TU37628 lncRNA downstream 173263 18497849 ~ 18498089 (-) True G28291
TU37814 lncRNA upstream 329419 19005908 ~ 19008421 (-) True G28429
TU37827 lncRNA upstream 360359 19036848 ~ 19037059 (-) True G28437
TU37828 lncRNA upstream 376835 19053324 ~ 19053869 (-) True G28438
TU37829 lncRNA upstream 377608 19054097 ~ 19054692 (-) False LOC120555695
TU37832 lncRNA upstream 386839 19063328 ~ 19063839 (-) True G28442
XM_039795742.1 mRNA downstream 12693 18650029 ~ 18658659 (-) True LOC120556268
XM_039795133.1 mRNA downstream 32131 18607469 ~ 18639221 (-) False homer2
XM_039795132.1 mRNA downstream 32533 18607469 ~ 18638819 (-) True homer2
XM_039794523.1 mRNA downstream 86758 18575060 ~ 18584594 (-) True LOC120555642
XM_039795684.1 mRNA downstream 189329 18471714 ~ 18482023 (-) True LOC120556233
XM_039795677.1 mRNA upstream 22856 18699345 ~ 18705558 (-) True LOC120556226
XM_039794056.1 mRNA upstream 29801 18706290 ~ 18718603 (-) False ppef1
XM_039794055.1 mRNA upstream 29801 18706290 ~ 18718603 (-) True ppef1
XM_039795068.1 mRNA upstream 52287 18728776 ~ 18767719 (-) False cdkl5
XM_039795067.1 mRNA upstream 52287 18728776 ~ 18767719 (-) False cdkl5
TU37603 other downstream 250853 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 287710 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 450802 18218122 ~ 18220550 (-) True G28121
TU37147 other downstream 1158184 17509950 ~ 17513168 (-) False G27925
TU37697 other upstream 42883 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 383266 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 447077 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 447077 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 2904553 21581042 ~ 21583498 (-) True G28933

Expression Profile