RNA id: XM_039795200.1


Basic Information

Item Value
RNA id XM_039795200.1
length 2547
RNA type mRNA
GC content 0.54
exon number 5
gene id pdcd7
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13240686 ~ 13248416 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgtcaatggatcATACTATGTGATCATGCTGTctatcatggatgtattaagctGTCTTTGGATCATAATCATAGACCGTGATGGGAGCGGGAGGAAGGTGGGTTTTAAACGTAGGGAAGAAAATATCACCACTTCTCTCCGAATCGGTCATATTCTCAATTATTCATGATATAAATGAGGCAAACACCCAACTGGAAAATGCACACAATGTAACCAGACGGAAACATTTGAACACATAATACCAAACCCAGAGAAAGAAAGCACCTTACAGACACTAAAGAGAGAAAGCCTCCACAACAGCAGCCAAGGCATGTCAAACATTATTACGTTTTAAAGAGAAATGTAATAGTAAAGAGAATCccgttttttttattagttttctgtttgttttttctgcatttctctctcgttcacactccagtccagttggtggcggtaatgcgCCTGTAATTGGTTTGCCAACCGCCAATAAaccatgaagaagaagaaacggCAGAGACGACGGCAGCTTAATAATGCTCCTGTGAAGAGTTAAGAGAAAGAGTAAACTGTTTAGTATTGTACATAACGTAGATTCGGTGTATTCTTTTACGCGCCATGAACAACATGTATCAGCCCGCCTCGTCAGACACCCAGCCGCCTCCTGTCTATAGTGGCGGCTACAGCGCGAACAGAGCCCCGCCGAGCAGCACTCAGCCGGGCCACACTGCTCCACCGTGGACTCCTTCCCAGGGGTATGACGCTCACCCGTATGGGTTTAGGTGCGATTTTCCAGCACAGTCTCCCGGAGGAGGAAGTTTCGGAGGGCCCGGCTTAGCCCTTCCGTATGGATTTGACCCCTCCGTCCCCCCGCCTCCTTTCGGCTGTCCGCCGCCCGGACACTTCCCTAACATGGTTCCCAGCGCACCGGTAAACATATACAGCAGCAGGGGAGCGTTTCCCCAGCAGCTTAGACCCTGTCCTCAGTCTACAGGCTATGCCCCGGACTGTAGTCAGAAACAACAGCACCAGTATGAGGATTTCTCTGCGAGTGGAGCTCGGTTTCCTCCGCAGGGTAAAGATGACCGGATTCCTGAGGATGAAACGGTCCTTCAGAGGAGGCAGGATCAACAGTGGCTCGGACGCTTTCTACAAGATAGAGAACAAAACTCCAAGAGCCTACAGGCCCGGCACAAGACGCCACACAGCTCTGCCCCGGAGCTGAGAGCGGCTCCGTGCAGCTCTGCCCCGGAGCAGAGAGCGACCCCGTGCAGCTCTGCCCCGGAGCAGAGAGCGACCCCGTGCAGCTCTGCCCCGGAGCTGAGAGCGGCTCCGTGCAGCTCTGCCCCGGAGCAGAGAGCGGCTCCGTGCAGCTCTGCCCCGGAGCTGAGAGCGGCTCTGTACGGGGCAGCTCACATTGTCTCCCAGCTGGCAGAGTCCTGTGAAATTCTGAGGAACAACGTGGAGAATGAGTGTGTTTGGGCCAACTCTTATTTAAAGGCTTTACAGGTGAAGAGAGAGCTACAGGACAGACTGGCAGTCCTCGGTGCCAGTGAGTGTTTAGAGAGTTGGAAAACTAAAGTATGCCGTGTTGCTAAGAGGAGGGCCCGGCTCCGGAGAGCCAGGAGGGAGCTCCAGCTGGAGCAGACCCAGAGAGAGGAGCGCATCGCGGACAAAGAGGCTGCCATAAACACATGGAGGATGCAGCAGATCCGCCTAGTggaggaaaggaagaaggagcTGGAGCTGAAGCTGGCTGCAGACTCTGTTCTCTGCGAGGTGAGGAAGAAGCAGGCAGACGTGAAGAGGATGCAGGAAGTCCTGAGGTCTCTGGAGAAACTGCGCAAACTGAGGAAAGAGGCAGCGTCAAGAAAAGgtATCGTGACGGAGCGTTCCTGTGACGAGGCGTTCAGCAGCCGCCTGCAGCAGCTGAGCGctgtgatgaagaggaggacggCGGTGTACTCGGCCGAGGAGAAGGCTCTGATGGTGATGctggagggagagcaggaggaggagaggaggagagagcaggAGAAACGAGGGAAGAAGGAGCGGGAGAGACAGCTGCAGAGGAAACGCAGAGCGGACGCCATGATGTTTGGAGATGAGCTTCCTGCCGACTCTGTGCTGCAGCCCTTCAGACAGTATTACACCGAGGCCGAGCGCTCTCTGCACGCTCTGCTACATGTCAGgCGACAGTGGGATGCTTTTGTGGTTCCTGCGGATCATCCAGATGGTTCTCCGGTTCCTCAGGGTTGGGTTCTGCCTGAGGACCCATCAGACCAGGCCTGGGCCTCTGCTCTGCACACGGCCCACTCCGAGTGACACGGCCCACTTTGATCCAAGTGGCACGGCCCGCTCTGCGCTGAGTGGCACGGCCCACTCTGAGTGACTGTGATAACAGCCAGCAGCTGGCACACAGCTGGGAGGAGAAAGCCAGCTGAAGAAGACATGGAAATAAGACTTTAATGAGCAGAGAAGTTGATATTAGTTTTAATTGTTCCAAACCCTCTGTTGAACTTGAATAAGAAAATGAGATAATAAACAAGTGATGTGTTATTGTC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36128 lncRNA downstream 69256 13170457 ~ 13171430 (-) True G27108
TU36082 lncRNA downstream 216601 13023855 ~ 13024085 (-) True G27063
TU36081 lncRNA downstream 217061 13023199 ~ 13023625 (-) True G27062
XR_005638832.1 lncRNA downstream 254268 12984309 ~ 12986418 (-) True LOC120556265
TU36044 lncRNA downstream 349393 12885852 ~ 12891293 (-) True G27026
TU36162 lncRNA upstream 328 13248744 ~ 13249163 (-) True G27133
TU36164 lncRNA upstream 1488 13249904 ~ 13250140 (-) True G27135
XR_005638669.1 lncRNA upstream 130614 13379030 ~ 13391141 (-) True LOC120555270
TU36205 lncRNA upstream 134069 13382485 ~ 13383183 (-) False LOC120555270
TU36213 lncRNA upstream 150587 13399003 ~ 13399374 (-) True G27178
XM_039795644.1 mRNA downstream 2434 13208329 ~ 13238252 (-) True ubap1lb
XM_039796072.1 mRNA downstream 42050 13188414 ~ 13198636 (-) True rasl12
XM_039795896.1 mRNA downstream 747515 12489220 ~ 12493171 (-) True vstm2b
XM_039795187.1 mRNA downstream 1062015 12157744 ~ 12178671 (-) True LOC120555959
XM_039795659.1 mRNA downstream 1253759 11980178 ~ 11986927 (-) True ccnd1
XM_039794264.1 mRNA upstream 36825 13285241 ~ 13294261 (-) True LOC120555522
XM_039796044.1 mRNA upstream 153908 13402324 ~ 13406615 (-) True chst1
XM_039794263.1 mRNA upstream 475177 13723593 ~ 13727470 (-) True LOC120555520
XM_039795130.1 mRNA upstream 719298 13967714 ~ 13995315 (-) True hsd17b12b
XM_039795129.1 mRNA upstream 719298 13967714 ~ 13995313 (-) False hsd17b12b
TU36095 other downstream 144920 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 935862 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 1278914 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 1571417 11643571 ~ 11669269 (-) False LOC120555651
XR_005638741.1 other downstream 1571531 11643231 ~ 11669155 (-) True LOC120555651
XR_005638877.1 other upstream 40794 13289210 ~ 13289264 (-) True LOC120556590
TU36388 other upstream 1221342 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 1594297 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 2391353 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 4259707 17508123 ~ 17513168 (-) False G27925

Expression Profile