RNA id: XM_039795202.1


Basic Information

Item Value
RNA id XM_039795202.1
length 2103
RNA type mRNA
GC content 0.45
exon number 9
gene id spg21
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13252165 ~ 13271218 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTGTACAATGTAACAAAGAGGTTCCAAACCATAGTTTAAACCGTCTTtgactgtagctagctaacctcCATGGTGTAATGTGCTAACGTTGGcttgtgacagacagacagacagacacgcagacaggcaggcagtcagacaggcaggcagctgtgtgttgtgttgtaggCGGTGGCAGATTTGCGGAAGTGTGTGAAGCTGTAGTCATATGACCAGGCAGGCAGCCGGAGGAAATGGTACCTAGATATGGATAAAATCCCTCGGACACGGTGACTAACATCCACAACGAACACGATGGACGAGATTAAAGTGTCTCCTGACTATAACTGTACAATGTGTGTGTCCCCAGATGGACGAGATTAAAGTGTCTCCTGACTATAACTGGTTCAGAAGCACAGTGCCTCTGAAAAGAATTATTGTTGATGACGATGACAGTAAGGTGTGGTCGCTGTACGACGCCGGCCCAAAGAGCATCCGCTGCCCCATCATCTTGCTCCCTCCAGTCAGTGGGACAGCCGAGGTGTTCTTCCAGCAGGTGCTGGCTTTGACGGGATGGGGCTACCGAGTCATCTCGCTGCAGTATCCGGTGTACTGGGATCTCATGGAGTTCTGCGACGGCTTCAGGAAGCTTCTCGATCACTTGCAGTTGGAtaaaGTCCATCtgttcggtgcatccctggggGGATTCTTGGCTCAGAAGTTTGCAGAGTGCACACACAAGTCTCCCAGAGTGCACTCGCTGATACTGTGTAATTCCTTCAGtgatacctccatctttaatcaGACGTGGACAGCCAACAGTTTCTGGTTGATGCCAGCTTTCATGTTGAAGAAGATTGTTTTGGGGAACTTTGCTAAAGGACCCGTGGACCCTAAAATGGCAGATGCAATCGACTTCATGGTTGAcagaTTGGAGAGTCTGAACCAAAGTGAGTTAGCATCGCGGCTAACACTCAACTGTCAGAACTCTTACGTGGAGCCGCACAAAATCAAAGATGTTGCTGTGACCATTATAGATGTGTTTGATCAGAGTGCTCTGTCGCTGGAGGCCAAGGAGGAGATGTATAAACTGTATCCTAACGCCAGACGGGCTCATCTGAAAACAGGAGGCAACTTCCCGTACCTGTGCAGGAGTGCTGAGGTCAACCTCTACATACAGATTCACCTGCGTCAGTTCCACGGGACGAGATACGCTGCCATCAGTCCTGCCATGGTGAGTGCTGAGGAGCTGGAGGTGCAGGAGCAGGGATCTGACCCCGACCAATGACACCACACTTCCTCAACACTTTCTCTCGCTCTTCAGCATTTCACAGGACTTTCTTCAATTTTTTATGGACCTCAACAGTCAATCAGCGAGTCAACTgagaatatttttatttaacagatGAAGCAATATTTTGATAATGACCTGTACATGGATTGTACTTGGCCGCTTTGCTTTAAAAACACTTTGCCTTATGTGGAATGAATTTGATAATCGTTGCACTCATAAACTGCCTGAACTGTTTGCCTCAAGTGTTCATTTCTATGTGTAATATATATTGTGCTTAACATGGTTTCCTGTTAACAGAAAGATGAACACTGGTTATGGAGACGTATATCTGAAAGTTTTTGTGTAATTCAAAGAgatgaaattgcatttttttccccGTTTGTTTTTGAATACAGTACCTTATTTTAAAATATCACATGTTCAGTTGTTATTTCCACTCATGTCACAGTGGGGAGCTGTCCTAAGGTTACACGTTGTGCCTGTGAGCAGTGTCTTCGTGAAGCCGTCCATCTGTTGAACTGCCAAAGCCTCAGCCACTAAAACACTTTCCAATCATAGGTCCAAGTCCACTACAACTACAGCCTGGGGGTTCATTCAGAGCTCCAAATGCTCCTGTAGTGATAACTgatcacttttctttctctgcttCTGAACACTTGTAGAATACGTGGTGTCCTGTGTCTTTGTATAAGATATGATGAAAACATGCTCTACACTGTGAAACATAATAATttcatttaatgtcactttCTAGCAGATGAATGTTGAAATCTGCTGTGTATATATGTCATGTACAACCAAGGAGGAATAGCAGAATGTGCTGCAAA

Function

GO: NA

KEGG:

id description
K19367 SPG21; maspardin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36156 lncRNA upstream 4156 13246700 ~ 13248009 (+) False G27129
TU36157 lncRNA upstream 4156 13246700 ~ 13248009 (+) True G27129
XR_005638824.1 lncRNA upstream 15113 13235413 ~ 13237052 (+) False LOC120556202
XR_005638794.1 lncRNA upstream 49945 13201417 ~ 13202220 (+) True LOC120556095
TU36105 lncRNA upstream 142975 13108962 ~ 13109190 (+) True G27085
TU36196 lncRNA downstream 107828 13379046 ~ 13381280 (+) True G27161
TU36198 lncRNA downstream 119938 13391156 ~ 13391364 (+) True G27163
TU36199 lncRNA downstream 130508 13401726 ~ 13401935 (+) True G27164
TU36214 lncRNA downstream 146719 13417937 ~ 13418154 (+) True G27179
TU36225 lncRNA downstream 379665 13650883 ~ 13651495 (+) True G27190
XM_039795643.1 mRNA upstream 43830 13204839 ~ 13208335 (+) True kbtbd13
XM_039795868.1 mRNA upstream 75762 13144507 ~ 13176403 (+) True si:cabz01068815.1
XM_039795869.1 mRNA upstream 75762 13161130 ~ 13176403 (+) False si:cabz01068815.1
XM_039796119.1 mRNA upstream 160730 13089535 ~ 13091435 (+) True LOC120556474
XM_039795800.1 mRNA upstream 180833 13065952 ~ 13071332 (+) True LOC120556313
XM_039795669.1 mRNA downstream 400259 13671477 ~ 13676421 (+) False slc35c1
XM_039795668.1 mRNA downstream 401248 13672466 ~ 13676421 (+) True slc35c1
XM_039795666.1 mRNA downstream 406914 13678132 ~ 13696767 (+) True si:ch211-102l7.3
XM_039795667.1 mRNA downstream 406914 13678132 ~ 13696767 (+) False si:ch211-102l7.3
XM_039795795.1 mRNA downstream 426428 13697646 ~ 13723065 (+) False slc1a2a
TU36145 other upstream 14346 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 141826 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 1220437 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 3392165 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 3647729 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 2170259 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 2203946 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 4453330 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 5290677 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 6216028 19487246 ~ 19487533 (+) True G28581

Expression Profile