RNA id: XM_039795218.1


Basic Information

Item Value
RNA id XM_039795218.1
length 2086
RNA type mRNA
GC content 0.47
exon number 10
gene id slc39a13
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23328610 ~ 23343208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCGTGGCGTGTGACCTCCTGTGCTGCAGCTAGCGGATCCCTGCCCTGCGCAGCTGGAGTCTGCTGTGAAACTCAGCGTTGCACTGCAAGCCTCATCAAGCCGTCCTGGATGGCAGGGACACACTGGTGCAAAGACTGCCGAAACCACAAGGTTTGAGAAGGCGCAGGAGAGGCCTGTTTTTCTGAAAGTGTGCTCCACTTGCAGCATTACTGGGTGCAAGGGCTTTTTGGACCGTGGGACGGATGAAAGGTGGAAGCTGTAGGAAGCCCAGCTGGGCTTTAGCTGCTCTGTTGATCCCAGTTACCCTGCTGATGCTGACCTCCAGAGGGGCATCAAGCAGCCACAAGATGACACAATCAGCTATGGCTCAtgcaacagccactgctgcaGGACCCAGCCCCAGCTTGACAGATTACCTCCCAGACCTCCAGGCAGTAGAAAACTTCTTATACAGCGAACATGCTCATGTTTGGCTCTTGTCCCTGGTGGGCTCTGTTGCTGTTGGCCTCAGTGGGATTTTCCCCCTTCTTGTGATTCCCATCGAAGCTGGAGCAGCCCTTAAAACAGAAGcTGGTGGCCAGAAGCTGAAACAGCTCTTGAGCTTTGCTATTGGTGGTCTCCTTGGTGATGTATTCCTGCACCTCCTTCCTGAGGCGTGGGCGTTTTCTGGCTCTTCAGCTGGTAAACACAACCACTACATGACCCAGGGCTTGTGGGTAATGGTTGGCCTGTTGGTCTTTCTCCTCCTGGAGAAGATGTTCCCAGACCAAGACGGCCACGAGGACCCCATTTCAGATTCAGACCTGAATTCTAACTCTGCTTCGCAGTCTAATTCAGCTTTCAGTGGAAAGGCAGTGGCAACACTCAAAAATGTACACCATGCTGAGTCATGGAAATCCTCCAAGCAGCAGAGTCGGCAGGAAAGATCAGAGAAAATCAAGATAAGTGGATACCTAAACCTCCTGGCCAACTGCATTGACAACTTCACCCATGGACTGGCAGTAGCAGGAAGTTTCCTGGTTAGCAAAAAGGTTGGGTTCCTCACCACCTTTGCCATCCTGCTCCATGAAATCCCCCACGAGGTGGGAGACTTTGCCATTCTGCTGAGGGCCGGATTTGACCGGTGGAGTGCTGCCCGCTTGCAGCTGTCCACGGCGCTGGTTGGTGTCTTAGGAGCTTGCTTTGCTCTGTGCGCTCAGTCACCAGAAGGCACAGAAAATGCCACTGCCTGGATATTGCCTTTCACCGCTGGAGGCTTCCTCTACATATCATTGGTGAATGTGGTGCCTGACCTGCTAGAGGAGTCCAGTTTAAGGCAGTCCCTACTGCAGatcatgctcattttctgtgGCGTGGCTGTCATGGCTGTGCTCTCTGCAATTGTTGAGTGAACATGGAAAAAACCCCTCTCGCCTTAACCAAAAAGTAAAACTCAGCATTCTCCACCAACCCCTTATATCTGGTACCTCTCATTCCTAGGAAACCTTTCATTACATTAATCTAAAGCAAATAACTGACAGAAGAACGGCACTTTATGGCTTTATAGTATGACTGAAAGGAAGACCTTCTTGATCTGCTGATGGGGCATTTGTGTGGACAAAATGTGCCAGGCTTAAACCTCAAGGGAATTAAGAGGGTTTGTATGGATCTCTGTTACCAAATTGTCTTATATTGTTTATCAGACAATCATTGTtttgcacacacatttacacaggtACACCTGATGTACCAACTCCACAGAATAGGTATTTTTAGACCTGTACAAGgaccttttttctttaaaatgtattcaaccATAAATTGGTTAAaacattgtatgtattgttaCTGTTTCTGATGTAGCTGCTGCATATTTATTGAAAATTTGACAAGCAACATATAGTTTTATCAGACGTGCGCCACCACTTCATAATTTTGTGTTATTGAGAAATAAGTGCCAAGAAGTCAGGATGGTCTGTTACACTAGTGACAGGTCTACACcaaagtaaattttttttttctgttgtgtaTCTTCTCTGCATCTTCTTTGCTTAAATGAATAATTGTGATAAAGCTGAAATTAATTAAAGACAAAGATTGCTACTA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14719 SLC39A13, ZIP13; solute carrier family 39 (zinc transporter), member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38953 lncRNA upstream 34206 23286897 ~ 23294407 (+) True G29323
TU38918 lncRNA upstream 167696 23160593 ~ 23160917 (+) True G29294
TU38912 lncRNA upstream 168217 23159951 ~ 23160396 (+) True G29288
TU38893 lncRNA upstream 239033 23045293 ~ 23089580 (+) True G29271
TU38881 lncRNA upstream 303859 23021429 ~ 23024754 (+) True G29262
TU38969 lncRNA downstream 25972 23369180 ~ 23374096 (+) True LOC120555420
XR_005638711.1 lncRNA downstream 26134 23369342 ~ 23371897 (+) False LOC120555420
TU39015 lncRNA downstream 75503 23418711 ~ 23421738 (+) True G29378
TU39019 lncRNA downstream 173309 23516517 ~ 23517263 (+) False igdcc3
TU39052 lncRNA downstream 253244 23596452 ~ 23599250 (+) False G29410
XM_039794303.1 mRNA upstream 74028 23219189 ~ 23254585 (+) False lgr4
XM_039794304.1 mRNA upstream 74028 23228908 ~ 23254585 (+) True lgr4
XM_039795192.1 mRNA upstream 169823 23105248 ~ 23158790 (+) False mettl15
XM_039795191.1 mRNA upstream 169823 23107125 ~ 23158790 (+) True mettl15
XM_039795190.1 mRNA upstream 172063 23105221 ~ 23156550 (+) False mettl15
XM_039795219.1 mRNA downstream 2279 23345487 ~ 23354201 (+) True tmem276b
XM_039795792.1 mRNA downstream 99941 23443149 ~ 23516756 (+) True igdcc3
XM_039795662.1 mRNA downstream 206984 23550192 ~ 23568550 (+) True LOC120556218
XM_039795663.1 mRNA downstream 208704 23551912 ~ 23568550 (+) False LOC120556218
XM_039795661.1 mRNA downstream 218966 23562174 ~ 23568550 (+) False LOC120556218
TU38916 other upstream 191586 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 336111 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 446961 22764719 ~ 22881652 (+) False ankrd11
TU38802 other upstream 447247 22867720 ~ 22881366 (+) False ankrd11
unassigned_transcript_140 other upstream 781341 22547201 ~ 22547272 (+) True trnag-ucc_7
TU39086 other downstream 383804 23727012 ~ 23731706 (+) True G29433
XR_005638781.1 other downstream 892516 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 1108104 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 1108166 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 2621471 25964679 ~ 25964758 (+) True LOC120556589

Expression Profile