RNA id: XM_039795227.1


Basic Information

Item Value
RNA id XM_039795227.1
length 5099
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120555986
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18970586 ~ 18995278 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTAGTTAGGTTAGTAACTGTCCGTGTGTGAGCCTGAAACATCGTCCAGGGATGAGACTAAAGGGAAAAGAAGTAACGTTAGACGTTCATCAGAAAACCTTTATGAACTTCACCTGCAGGACTTGGAAAATGCTTTTGCTGCCGAAATGGTGGATTTTAATCGTTTGTCTGACAGATGTCCTCCTTCCCCGCTGCTCGGGGGTtcatgtgtttgtgagagaTGAGAAGAGGTATGCTGTGCTGTTCCAGTCGGTGGTTCTGCCGTGTCAGTACAACAGCGTGTCCACCCAGGTCCCCGTGGTGCAATGGGTCTACAAGTCGTACTGTCAGGACCGCACGCGGGATTCGTTCAGCTACCCAGACAGCATGAGCGGAGGCCAGGGAGGAGGTGGGCTAACGGGTGGATCCAGAGGAGCCGGCGGAGGGTACGAGACGGGGATGACAGCGAGCTACCTTGACTGCTCTGACAGCAGCCGGACGGTCCGAACTGTGGCCTCCATGTCTGGTTCCTCAATCACACTGTCAGAGTACTACAAGAGCAGAGACATCTCCATCATCAACAAGGCAGACCTGCGCATAGGAGAGGTCCAGTGGGGAGACAGTGGAGTTTACATCTGTAAAGTGGTTATAGCTGATGATTTAGAGGGACAGAACGAAGCCTCTGTGGAGCTGCTGGTTCTTGAGTGGGTGTTTGTGTCGGCGGTGGCACTGGGCAGTGTCTTATTCCTGCTGTTGGTCGGGGTTTGTTGGTGTCAGTGTTGTCCTCactcctgctgctgctacatCAGCTGCTGGTGCTGTCCCGACACATGCTGCTGCCCAAGACACCTTTATGAGGCAGGTAAGGGTATAAAGACGGGCACCTCCACCCCTCAGACACCTGCCTACCCTCCATACTTTGTCACTGGTGTTCCGACGATGGTTCCCATCGCACCCCCATCTCTGGTGGACAAGATGTCTTCCCTCCCCCCTTCAAATGGCAGCATACTCACAGCAGTGCCAATGCATGCTGTAGGGGTTCCCTACCGCGCCCCTTCATCTCAGGATCAGGACTCTCTCAGGGTGCTACAGTATCTAGAGAAACAACTGGCTCACTTCAACCCTGCCAGGTCAATCAGCCACCAGTCCTGTAGCCTGTCCGAGCTGAGCTCCCTCCACGAGGGAGAAACCAGCTTCCGCCAAACATACCGAAATGTCCAGAGGAAAGCTCTGCCCGCCATCCCTGACCATGACCCTCAGCCTGAGCCCCAACGCTACCGTGACAACCGCAGCCCAGAGCCGCAGCGTTACCGTGACAATCCCCCTTCACCCCAACGATATCACGATGACCGCGACTCAGAGCCTCGCCGCTGCCAGGATGAGCCCCTTCCTCCGCGGCGGTACAGCGATGACCCTCCGTCCTCGTCCCAGTTGCGCAGGCCCGGCCGAAATCAACGGCAGCAGAATCACAGCGATGAGGACAACCACAAAAGGTGGAACCCTCGTTCAGAACATCTGCGGAGAAAGACGTACCGCACTGCCGGACGAACCGGCTCACTAGAAGAGCTGGAGGAGTTTGCTGCTTCTTACaagcagagaggagacagaggggaaGAGAAAAGGGAAGAGGACAGGGGAGACTACGAGATGGAGCGTCTGGAGTTCAATCGGTATCCTTCATACCGCAATGGTCCACCTCAGCATTATCACAATGACGAAAATGAGCTTGGCGACAACAGCGACCGCGAAGATCGTCTCCGAAGAAACAAGAATAACGGACATTACATAAGCCCACTTCAGTCACCCGAAAAGAGACGGGGCACTTGGGACGGCGAGCGACCTGCCCCACCTCCTCCCAGGGTCAGTCCGCCATCGACTTCTTCTCAAGAGAAGGACTACGACGGCACGTTCCTGACCAGCCTGCTGGAGCGCAAGGCCAAGTTACGAGGGGTCAGCCAGGGGAAGAGTGGGGCCCGGGGGGAGGGGGATTCAGACACAACCTCTAAGGGCAGCTCGAAAAAGAGCAGCGGGGAATCGAGTCGGCACTGCAGCCGGTCGCCCAGTAACAGGCCTGAGGCGGATTCACTTCCTCCCTGCTCAGACACCGAGCGAAGCAGGACGGACAGGCCATCTCCGCGGCCGCTCCCAGCAAACACTTGCTGCTCTCAACCTCCTGGCCATTCCCTGGCCGGTCGCAGAGAGGAGCCCAGAGACAAGACCCGCAAAGTGAGCACTCTTCTCAGCCGGGACTCCCTCATCGTCTGATGGACTGAAAGCCACACAGACTGAGCACTTGCGCTCAACAGGACCCGCATGTCAGCTGATGAAAGATGATAGAAATGACTATATGCAACATCAAAAATATGCAACTGACCGTGAAGGAAAGCTGAATCAGCACAGAAATGGacaacagacacactttttctaTGGCGACTGTCACTAGGGTTCCTGACTGCTACGATGATGTTCGATGAATGATGAAGTCATTACTGTTGAAGTCATCAGCTGGACTAACACTGAACTAATGGTGACTGGGTCAATGTCCTGGACTGTCCCTCCCAGCGGGACACTGTTCGTCTCCCCTCATCCCTATACGCTTTACGCTTCCAGCACAAAGAGTGCATTCATTTCCACTTGATGAGATATCTGCTTTAAATAAGCACAGTTGTAGTAAAGGAGGTATATGACAACAGCATTATTGTAaagaacatactgtagcttcagCTGAATGACAATACACACACTGTGACATTCAGCAACACATTCAGGGACTAAAGCACCTAATTCAGACGGCTTTTGCAAAGAGATTTTAAATGTTAACTAAAGCTCGTAGTAGTAACCAACATTATCAAATGTTGATATGATGTGTATCTACAgaggggtggacaaaataatgtAAGCACCTCCTGGAAAAGGactcttaaagctgcattaagcAAAAGTTGGGCCAGCTTTATAAACGCAATAGTTTGTCACTGGCATACTGAGTGAGTGATGAAGTTGCATTATTGATCGGTCGAGTGTTGGAGTTCCACATTGGCCGTTGCGAATAGGCACAGACTTCTCAATTATTGACTCAAACGTAGCTTTACCATATCATATGATTTGCTACTTCAGTCACTTTAAGAACAAATATTACTGCAGCACTACAGACATTTGCAGATTAACATTTAATAGCCAGGATTCACATTATAGACACTACCACTGACTATCTGTATAACACTTTGGCCACAATTTACCACATTGGCCGTTACATGATCGAGCCACATGCTAGGTTTGACCTGGTCTTGGTATATTGACAATGGATCAGTAAGGCAAAAGGTGTCAATTGTAGTGACTCTGCAGTTTTGCTCAACCCTACAGAGCCGCGTAGTGTTTTTGAACTCATCGTTTGAGGTTTGCACGCTGCGCAtttactgttttgattcactttCACCGCTCTCAACCCTGTTTACAGCAACAGCAGGCATCTGTTTTTTAGTATATAGTAATATTAAAAGCTCTTAAAAAGCCACTGTACTCTACCTTTTCAGCACCAAATGGCAGACGGAcacagttagcaactagctggtggcTAATGTAGTGTTTAGCAGCCATAAAAAGtgagatatttccctcaggagttgtttcaagaaacaacaacagagcTAAAACAGCTAAAcggagctaaaaggagagtgaatatcgGACTAATATTCATCAGGTGCtcacaaacacaactccaaatgaatactaatgttgctctgtatctGCTGCATATCTAAAGTGTTTGCTAAATGTACACCATTACAACTTTATGAGGTGataactgttttgtttttttaattttctttatacaagtgtgtttacatCTTCTACAGGCCCCATGTGGCCAACAGAATCTGTTAATGTTTCTTTAAGTAACTTAATCTTACATGCAAATGTTCGGTTCAATGCCACGTAACAACATTTTTCAGCTTCatcaatttcatttttattgctTTAGGCATTTTTAAAGCAACAAAAGATGGAAACAGAGCTTTTGAAATATTGAATAATATGTGCTAAAAATGCAGGAGTGCCAATCACAAATGTATTTGATAGGTCAATGGGAATCCTTTTGAAATTCatgacaacatacagtatatgccaaACACAGAAAGCTACACCGACAAAGTAGTAAACTAATGAGGCTATGCACTAATACTGCATACTGATCCAATTTTGACCCACACTTGCAGCATTGGCAGTGGTGATTTAGTTACTTCTTTATTCATGAAGCAGTAACGTTATGTTTTCTCCACCTTGTATATCTGTGGAGCTTTTTATCGTCTATTACATAATAACATGTTAGATTTCGCACAAAGTAACTACTTTCTACAGTTGACTAAAACCTTATGAaatctttgttttttgtaaacCTTTAAGTTAAAGGTATTGAACTGCCACTATCCTTttaaaagttagttttttttacgACAGTATgaagacatttttatatataaaccGGACCTATTTATATGTGTGGTGTGATATGATCGATGTAATTTGTAAATGATTATGTTTGTTTAAGCCTTCCAGTGTAACTGTGTACATAAGATGAAGTGCCTTTGACTTGATAACTGTAATTCAGCCTTTTCTTATCGCTGCTGATTCAATAGCTAGACCAGCACCTTCATATGTTGTCAACAgtcgcacacacatatacaaaacaCATATTAGCTGACTGATTGTTACTTATTTTGATCTAACATTACACCAAACAGTATTTTATTATTCCTGCTTCCATTTTAGTCTTCTTGAAAAAAGTCTAAATCTCTAAAACTCGTTTTAGTTCATGTTTTCTGATATCTGGTACTGacaattctgtgtgtgtgtgtgtgtgtgtgtgagtgatgacTCTTTACTTTTCTGTTAAGGAGACAATGTGTAATTGAGTATGACTCATGTCTTTGTTCATTGTTGTAATCACAGACTGCCTGTCTTCACGACACAGCTGTGTCAAAACTCATATATCACTTCTGCCAGCTCAGCCACAGAGATCTGCGTCGCAGTTGTTTTGACAGCCACATAAAATCATTTCTTACAACTTTTGTCCATaaactctttatttatataaataaagacataaaaCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638784.1 lncRNA upstream 123180 18846269 ~ 18847406 (+) True LOC120556026
TU37505 lncRNA upstream 354777 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 360708 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 525290 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 789385 18004828 ~ 18181201 (+) True LOC120555993
TU37774 lncRNA downstream 58846 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 62268 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 76542 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 87929 19083207 ~ 19087001 (+) True LOC120555697
XR_005638744.1 lncRNA downstream 91917 19087195 ~ 19091823 (+) False LOC120555698
XM_039795225.1 mRNA upstream 1108 18958969 ~ 18969478 (+) True LOC120555985
XM_039794187.1 mRNA upstream 36762 18926047 ~ 18933824 (+) True vegfd
XM_039794188.1 mRNA upstream 39452 18926038 ~ 18931134 (+) False vegfd
XM_039794030.1 mRNA upstream 44958 18910087 ~ 18925628 (+) False pir
XM_039796005.1 mRNA downstream 4250 18999528 ~ 19008386 (+) False LOC120556409
XM_039796004.1 mRNA downstream 4325 18999603 ~ 19008386 (+) True LOC120556409
XM_039796007.1 mRNA downstream 4325 18999603 ~ 19008386 (+) False LOC120556409
XM_039796006.1 mRNA downstream 4325 18999603 ~ 19008386 (+) False LOC120556409
XM_039795102.1 mRNA downstream 15199 19010477 ~ 19023972 (+) True tmem39a
TU37478 other upstream 402106 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1227852 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3484165 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3524194 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5732767 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 491968 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 502460 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 502815 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 517078 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1715826 20711104 ~ 20761147 (+) True G28770

Expression Profile