RNA id: XM_039795233.1


Basic Information

Item Value
RNA id XM_039795233.1
length 5041
RNA type mRNA
GC content 0.51
exon number 30
gene id plekha7b
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24235723 ~ 24314645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAACCGGTTAGCCTATTTCGTCAGCTCAAATTATACATCAAGACATAGTCGTGGAAGTGGTCTGTTGACGAATTTGGTATTCTTCCCCTTTAAAAACTATGCAGCCCTAGCGGTAGGTTTTATCCGGGCTCCCTGGAAAAGTCtgcggagagagggagaggggggacaAGCCGAGCCAGAGACGAGAGATCATGGCGGCACCTCTCGGACGGGACACCCTACCTGACCACTGGTCATATGGGGTTTGTAGAGACGGCCGGGTCTTTTTTATTAAtgataaaagtcatagcacTACTTGGCTACATCCACGCACTGGTGAACCTGTTAACTCCGGGCACATGATACGGTCAGATTTGCCAAGAGGATGCGAAGAGGGCTTCACGGACGAAGGAGCCAGCTACTTCATCAACCACAACCTGAGGACTGTATCGTTTCGGCACCCTGTGACCGGACAGATATCTCCTGAAAACACAGAATACACACTACAAGACAGGATAGAAGTCCGTATGTCCAAGTCAGCGGCCAATCAGAGATCCCCGAGCATGGTCACAGAGTCCTCCAGGGCTGTGACATCAGCAGCAGTGGATGCCACCTCAGGGTCAAAGTGCTCCAGAGGTGCGGGGAAAGTGCACAGTTTTGGCAAGAGGGATCATGCTATTAAAAGAAACCTCAACATCCCAGTGGTGGTGAGAGGCTGGCTCTATAAACAGGACAGCTCTGGAATGCGGCTGTGGAAAAGGAAGTGGTTTGTTTTGTCAGACTACTGCTTGTTTTACTACAAAGacagcagagaggagacagTGCTCGGGAGCATCCCTCTGCCCAGTTATGTCATTGCACCAGTTGAGCCTGATGATCACATAAACCGAAAATACGCTTTCAAGGCGAGTCATACAGGAATGCGCTCCTACATTTACAATAAGAACTCTGTGATTGGCTCACAGGCAGAACACTGCGGGATGCGGACATATTTCTTCAGTGCGGACACACAGGAGGACATGAATGGCTGGATCCGGGCCATGAACCAGGCTGCGCTGATGCAGCAGAGTCACACTATAAAGAGAGAAGTGGAGAATCCTAAGAAGGCTGTACAGCAGGCTGTCCCACAGGCCAACCATGTCCACATCAACCAGAACTCATCTCAGTCAGAAAGCCTTCGCAGGACAGAAAGAGTGGAAGCTCCGGAAAATTGTATTCAACTGGCTCATGGAGACGAGATGAGGTATGAATTAGAGATCCAGGGGAGGCCCAGCCAGTCAGCTACAGAGGAAAGAGTAGAGCGACTCTCGCCAGACTCAGTCGATGGTGCCACCCACAAGAACGGACAGCAAACTGTAATCCAAGTGGCTCTGCCACCAGAACAGAATGGAAATCTTGTCTATCAGAGGGGCTTTGTTTCGCGACCAGGCACTGAGAAACATGTGCAGAGGAAGAATACGCTGGCTCAGGTGGAGCAGTGGGTCAAAGTTCAAAAAGGGGACCCACCAAAGAGTGGTCCCTCTGCTGAGTACAACCTCCCTCGGCGGACTCCTCCATTAAAGCCCAAAGCCAGCACATCGGATGCCACCTATCAGTCGTTGCCAAAGTCTCCCCGTCTCCCGTCTGGCAGCAACTCTCCTCCAGCAACATGCAACCTGCCTAGTGACTACAAGTATGCCCATGACCGTCTCAGCCACTTCCGCATGTCCACCGACGAGCGCATGGCCACCAAGGAGGGAATGGTGTGGCAGCTGTATGAGtggcagcagcggcagcagttCCGTCATGGCAGCCCCACCGCTCCTATCTACACTGGCCCTAACTTCACAGACTCTTCATCTTTTAGAGTTACTGTGGAGATGCCACGTTCCATCTCTGTGCCTCCGTCTCCGTGTGAAGTCCCACCATCAGTCCCCTCCTCCTTCAAACCCCTGTCACCTCGCAGGCCCCACACTCCTTCAGACAGACGCACAGTCAGGCCCCTGGATGAAGTGACACCAGGGGACAGCACAAGGTCCAGCTCGCCCGGCCATATTTGTGCCCTTTCTCAGACTTCCCAAATAGAGAGAAGGTCCATGCCTGCCATGGGCTACATCACACACACTGTCAGTGCACCCAGCTTGCATGGCAAAACGCCAGAGGAGCTGACTCTGCTCCTCATTCAGCTTCGGAGGCACCAGGCCAAGATGGCTGGTGTGCATAGCCCGAGTGATGCGTTCGCTCACCTGCAGCACCACCAGCACAACGGCCTTCTGGGCCCCAGCATGCAGgctgatgatacttacatacaaCTGAAGAAGGACCTGGAGTATCTAGATCTGAAGATCCAAAGTATTGACCCGATGATCGTTTCAGTACACAATGTGTTTGAAAACTCCACTCCACAGAGTTTTGGGTACTGTTGGAATGTTACTGGACGGGAGAGTTTAAAAACAGAAAGACCATCAAGGCCTGTGAAAATAGCAGAAAGTGATGCTGATGTGAAATTAAGTCGGCTGTGTGAACAAGACAAGATTCTACAGGAGCTAGAGGCCAGGATACGCACTTTGAAGGAGGACAAGGACAAGCTGGAGTCTGTGCTGGATGTTTCCCACCAGCAGATGGAGCAATACAGAGCTCAGCCAGCCCATGCTGAGAAGATTGCCTATCAGCAGAAATTACTACAAGAGGATGTGGTGCACATCAGGGCGGAAATATCTCAAGTCTCCACAGAGATGGAGAACGCGTGGAATGAGTACAGCCGGCTGGAGAGAGATGTGGACTGGCTGAAGTCAGCCCTGCAGGGACAGATGAACCGCAGCGATCTCTCTCAGAAAGAGAAAGCCCAGATCAGAAAAGAGCTGTGGAGAATTGAGGATGTTATCGCAGGCCTCAGCACCAGTAAAGCCAACTACAAAGTCACTATCTCCTCTGTTACCAACCCAGAGAGGAAATTTGTGCCTTCAGTGTCGGCGTCATCAGTGCCTTCTGTGTCTGGGAGCCCGTCTGCTATGGAGATGAGATTTTCCCAGCAACAGCAGCACAGCCCCCACCTCAGCCCCAGtagccacacccccaccctttCCTCCAGCCCCAGCCATCAGCCCTTACACCACTGGGTGGATGCAACCATTACCAGTGGACTTAAATGGTTCTGTGTGCAGGGCGAGGAAGATGTGCCTCCCAGACCTCCTCTACCTCAGCTCTACAGCCCTGATGAGCATCCTCCTGCTGTGCCCCCATTGCCCCGGGAGACAACGGTCATCAGACACACTTCTGTTCGCGGCCTCAAGCGACAGTCAGATGAACGCAAAAGGGACAGAGAGATTGGCCAGTTCACTAATGGAGACAGTAAGGTAGAACTTAGGCCTTTCCTGAGCGATCCAGAGCTTATGGGAGCTGGGGACGGCTCCAGCCACATCACTGTAGTAGCATCTGGACGTGCCGGTTACCAGACGTTACCAAGCAGAGGAGTGGCTGGCTCCTCGCCTAGGCTAAATCAGTCTTCGAGCATCTCCTCATATGTGACCCTCCGAAGAGCAGCCTCAGCTGCTGGCGTGAAGGAGAGACCAAAAAGTGCCTTGGAGCGTCTGTACTCTGGGGACCCGGCGCAGCAGCAGAGGGGGAAGATGAGTGCTGATGAGCAGCTGGAGAGGATGAAGAGGCACCAGAAGGCCCTCGTCCGCCAGCGCAAACGCACCCTGAGCCACGGAGACCGCCACGCCTCTCCATCCTCGCGCAGCTCGTCCTCATCCTCACGCCCACTTTCAGCAGACATGGGATCAtggaagagagagcaggagtTTGACCTGCAGTTGCTCGAGAGGGCTGTTCAGGGGGAGGAGGCACAGGGAGTTAGGAGCGTTCAGGGAGAGGAAAGACCTCCCGAGCACAAAGAGAGACCCCGCTCGCACTCTGACGAATGGCTGACCCTGCGCTCCACAGCCACAACCCCTCCCGCCCATGAGGTCGACCTGGAACCACTAGACTATGACCTGGACCTTAACAAAGAGCTTTCTAAGCCTCAGAAAGTGTTGATCCCAGAGCGTTATGTGGATTCAGAGCCTGAGGAGCCTCTCAGTCCGCAGGAGGTGGAGGATCGTAATCGTAAGGTGGAGCGCATCAAGAGCATCTTGGCAAAGTCCAgTGTGCAAAACCTAACACCCACAGTGACTGTGGACAAGCCAGAGGTTGGGCTAGTGGCTCTTGACTCAGCTCtacaggagcaggagaggatCATCACCATGTCCTATGCTCTCGCGTCGGAGGCCTCGCTCAAGAGTAAACTAGTCACAGTTCCACCACAGTCTAAcatccccacccctcctcctccaccccctcctccgcctcctcctctccctcctcttcctcctgtttcTACGATTTCTACTGTATCTCTGGCGCCTCCCTCTCCTCTAAGCAACGGAATTCACTACACGTTTGTCTAATCCGAGAAATAAACTCAAGCAATTTCTGGACACTGAGGTGCTATTCCACAatgacaacaaacaaccacattCTGCAAGAAAAGAGGATTTTTTGGGACCTTTCCATACAGAAGTACAAGAACTGtactaaacatttaaactgcTCTCTGAGGCTCACGCAGCATTGACTCGTTAAGGAAAATGGAAGACTTCGCAATGGGAGATGCTGGGCCCATTAACTATGGAAGTGTCTAACAAATGTTATCATATGTTATCATAATCATCTTTTCTACATGTTATTGCACTTTGAATTGTACACTGTATCATGTTTTCAAGGTATGACTGAATTGCTTTTACTTGCAGTGTGATATCAACTGGGAACTTGCACagaatgttaaaaacaaaaggGACTAAATGTGTCATGAGGGTAGTATTTTTTGTCAAAAATCAGATCATATTCTTACACCAAACCACTTGAAATATCATATGTATGTACCTGTAGCACTGCCAGTCTCCTTTTAGCTTGCCAaaatgaatttttatttttgcttacATCAGGATGAAAATAACCTCTAACATATTTTCTGTGTGACTGGGGATGGTTGCACAATGgacatttataaaaatgttaatATTAAAGATGTTAACACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39240 lncRNA upstream 7808 24226851 ~ 24227916 (+) True G29535
TU39145 lncRNA upstream 84969 24150510 ~ 24150755 (+) True G29477
TU39118 lncRNA upstream 273392 23960107 ~ 23962332 (+) True G29460
TU39096 lncRNA upstream 356282 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 491835 23742705 ~ 23743889 (+) True G29438
TU39280 lncRNA downstream 136313 24450958 ~ 24454877 (+) False sox6
TU39278 lncRNA downstream 136729 24451374 ~ 24455669 (+) False sox6
TU39279 lncRNA downstream 140588 24455233 ~ 24455669 (+) False sox6
TU39281 lncRNA downstream 140588 24455233 ~ 24455688 (+) False sox6
TU39299 lncRNA downstream 288337 24602982 ~ 24605198 (+) True G29579
XM_039795036.1 mRNA upstream 13278 24206711 ~ 24222446 (+) False caprin1a
XM_039795034.1 mRNA upstream 13278 24206714 ~ 24222446 (+) True caprin1a
XM_039795035.1 mRNA upstream 13278 24206965 ~ 24222446 (+) False caprin1a
XM_039795507.1 mRNA upstream 85819 24127460 ~ 24149905 (+) True ext2
XM_039795506.1 mRNA upstream 109904 24093243 ~ 24125820 (+) False dagla
XM_039795288.1 mRNA downstream 5419 24320064 ~ 24450656 (+) False sox6
XM_039795295.1 mRNA downstream 5421 24320066 ~ 24450656 (+) False sox6
XM_039795290.1 mRNA downstream 6974 24321619 ~ 24455683 (+) True sox6
XM_039795285.1 mRNA downstream 6974 24321619 ~ 24450656 (+) False sox6
XM_039795293.1 mRNA downstream 6974 24321619 ~ 24450656 (+) False sox6
TU39086 other upstream 504018 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 1098697 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 1243222 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 1354072 22764719 ~ 22881652 (+) False ankrd11
TU39283 other downstream 136667 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 136729 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 1650034 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 1651532 25966177 ~ 25966255 (+) True LOC120556588
TU40247 other downstream 3151133 27465778 ~ 27467021 (+) True G30295