RNA id: TCONS_00075189


Basic Information

Item Value
RNA id TCONS_00075189
length 6449
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_037385
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 42732199 ~ 42905622 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTTTGTGCTGAGAACATGCTTTATTGAATCATTAATACTCGAGGAGGTTGCATATATAGATAAGACTACAATTCTACATAAAATCAAACCAAAGTGCAGGGCATCTAAACCGTTTCTTCCCATTGCACAGCAGGTGGTGTTGCTGCGGCACACTGTCTTGATGTTTGCCCAACAACTTACAAGATGAATTCTAAACTAACACACAAACACGCAATGCATCAAAGCAATCCTCCAAGAGGAGGCTCTGTTTCTGCAAGGGAGTGCAAGACATACTTTCCTTATTGGCCAGGAGATGTTAATTTTTCAAGTTTATTCAAGCAGTCCCTTGCCAGAAAGAGagcacattaaacattttttgctCATATTGTGCAGGCCGCTCGCACCTTGAGCATGTCATTAAAATGGTGGTATGACATAGTCAGTCTGAACACAAGGCCTAGTTGCCCAGCTTACATGAGGGTAAATGCAAACAGCGCTCAGGGCCTTACATTCAAGTAACAATGCATAAGAGTATGGTTGTAATATCGCTGCACATGTAAACATGCAGGTATAACTTAGTCTCTCAGAGTTAAAGTAACGTCAACAGGGAGCCTCTCTACCTGTTGAGGCAATCTTAAAGACTTCAACTTATTGTTGAGGCACAGAGTTTAGTTTCAGATTCATCAGGGTATTCGTTCCATGTGAAACTTTCTCCTGATAAATATTTAGTTCCTTTTGTTTCAgttaatattgttataaataacAATTCATACATTTTCCATAACCGTTAACTTCGGCTATATACATTATGTACACGTCACAGAAAAATGGATCAAAAATCCTAAGTCATAATTATCCAATATGGCACATTTTATAATAACTTTAGACTTTAGTCTAGTTTGGCATAAATTAATGTCAAGTTTGGTATAAAAATAGTTTATATTTACAGGAACAGATATCCAGGTACGTATCAAgattttcttttctctctctcatttaataaaaacaaagttgCTTAACGTAGGAAGGGGTGGGGTATAAATTATGGCTTTACTTTGATCGAATACTGATGGTAACAGTTGCCAAGTCAGATCCATGCTCATTAGAAAGTTTGAGTGTGTATGCCCCAGCATCGGTCTCTTTCACACCAGTGATAATGAGTGTGGTGAGGTCCTCGGTTGTCTCAATATGGAACCTACTGCTATCTTCTTCTCCAGGCAGTTTCTTTCCACCTCGAGACCACTCAATATGAGGTGCTGGTTCTCCGGAGAAGGCACAAGCCACGGTAAGAACCTTTCCAGTTTCAACGCTGATATCTTCAGGAAGAGCTTCAATTCTCGGAGCTAAgcctataaaatataaattagttTGAAATGATAATAAGCCATCATGTAATAATTGTGCATATTTGTTTAGAGTCAAATTGGTTCTTACCTTGAGCACTGTGAAGGGCTGCTCTGACTGAAGTTTCTTCAGCATGTGAATGACTTGACATTATACTGCTTGAGCTCATTGCATACACTGACTCTGATGTCATGGATGACATGCTAGACATTGACATAGTTTCAAATTTCATCTCAGCCATTGCTGAACTGCTGAATGATGCCTCTTGCATTGTGCTCTCCATGTGGATGGATTTTGAGGTAAAACTTTCATGCATGCTGCTAACTGCAGCACTTTCCCTCTTAATAACCATTTCACTTCCTCCTTGGATTTTGGAAGACACGGattctggaagaaaaaatatttaaagtactgACATTAAGAAGAGCAGAAAACAAAAGGAAAACTAATCTAATTTAGGTCAGATAAAACGTTACCTTGAACAGCCTTATGTGCAGCGACGAATGCAGTAACTTTTGTGTAAATTGCTTGAAACACTTGCCCAACAAAAGAGAATGATGTTCTTGACACTGCTCCTCCCTCACTTATGATTTCACATGAATATTCACCTTGATCGTCCTCTGAAACATCGGATATATAGAGACAGCAAGTTCCATCTGCAGATGAATGAATCTGGTAGTGACTGCTTTGGCTTAGTTTTCTGCTGTCTTTGTACCACACAACTTCTCTCAGTGAGCTCTCAGCAACAAAGATCATCCTAATTTTGTCTTCAAAAGCCTCAGCTTTGAGTTGCTGAATGATCTTTGGTGGTGCTTCCTTTGATGGGGTTGGGGACTTCACTGTAAGTGGTGATTTCATTCTTTTAGGTGACATAATTGGTTCAGGAGATTTGACTGTTGGTGGGGATTTGGCTCTTTGAGGTTCAGGAGACTTAATGCCAGTGGGTTCTGGTGATTTAATTTGGGGTTCTGGAGACTTTACGGAAGGCACAGGGGATTTGACTGAAGGCTCTGGAGATTTCAGTGATGGTACAGGGGATTTTACCAAAGGTTCTGGAGACTTTACCGATGGCACTGGAGATTTCACAGAGGGCTCTGGGGACTTTACAGATGGCACTGGAGAAGTAACTGATGACTCTGGAGATTTAATTGGTGGCACCGGAGATGCCACTGAGGGCTCTGGTGACTTCACTTGTGTTGGTGTTACTTCCTCTTTAAGTATTGGTTTATTAATAGCCAAGGTACATCTTGCCTCTTGCTTTCCTTCTGAATTTTCCACAACTACAGTATAGTTGCCCTCATCTGAATATTCAACTGATGAAATTTCCAAAGTAGACTTATACTGTGTGGTAGACACATGAATACGATGTGAAGAGACAACTGTTCTTCCCTCATGCATCCATGTGACAGTTGGTGCTGGCTCTCCATCAATATCACACACGAATCGTGCAGAGTCACCCTCAGACACAATCAGAGAATGTGGTTTTGTGAGTATTTTGGCTGAAAGGGTAGCTTTAATTTTCTTTACCGATACTTCAGCAGATGTTTCTGATTCTTTTAACTTTGATTCAGATGACACATGCTTTTCTGATGTTGTATGTCTCTCAGAGGATGAATATGAAGCTGATGATAGGTATTCAGTTGATGCATATCTAATTGGAGATGATGCAAGCCTCTGAGATTCATACTTTTCAAAGGAAGAAACTTCATGTCTCTCGGTTAACTTTGTTTTGAATTCTTGAATCTCCAAGTGAGTTCTTGAGGCAGAGGAAGCTCTGATTGTTGTTGAATGATAATAATCTGTTTTTGTTATATCAGGTACAATTTGTGTCGGGGCCTCCTCATCTCGACGTCTTGAAGAGTATGTAGTAAATGCTCCACCTGAAACATCAAGAGTTGCATAGTCTGATGCCTCACCCTTTGAATTTGTGCAAAGAGCACGGTATGTGCCAGTGTCCTCAGCCTGACAGTCATTAATCTGGAGAGATAGGACTCCACTCATATTTGTAAACTGGTATTTGTGGCTCTCTTGTATTTGTTGTCCATTGTGGAACCACTGGATATTGGCATCAGGCTTGGACTGAACATTCAAAGTGAATTTAGTGTTTTGACCACATGGTACACGGTGAGAGCGCATTCTTACAGTGATACGTGGAGCATGGTCAAGACTGAATGGTTGCTGTGTTACAACCTGGTATTTGCGCTCAGATTTAAGAGCAGCTTTCCTTGCTTCATATCTAGACATGATGTCAAATCTTGCAGACCTTTCAAATCTAGAAGAGGATCTGGAGGATCTTCTTTCTGGGGATACAGGACTTGGTGATCGAGGACGAGTTCTCTCAGGGGTGGGTGATCTTCTTTCAATTATTTCAACTTCAGCCTCTGTTGGGATGCGTGCACGAGGTTGCCTGATGAGTTCAGAGACAGGGCGCATCAGTTCAATGTATGTTGGAGACAAGGATCTTCTCCTTCTCAAGAAATGTGATATAGGAGGAGGAGAGCCTCGAGCTTGCTCCGTTGTTACATGTTTTGTCTCTTCTACACGTCTCACTTCAGCTCTGTGAACAGGTCTTGGTGAGGCACGTCGCAGTGCAGACAACTCAAAGCGCACAGGGCTTCCACTAGGTGGGGAGGCAGAGAAGCCCAGTTCTAGTTCTTCTTCAAGCTCTCGTCTTTCTTTTTCTGATAATTTTGTTGCCAGATACTCCTCTTCCTTAAGCAGCTCCTCATCTGAAATATCACCAAGTGAGCGTCTTCTCAGTCTGAATGATGCCTCTGATTCAGGGGATGGTGAACGCCTGGCTGGTCGAACAGTCTCCAAATCATCTTGTGTAAGTTTTGGAATGCGCCATTTCGGTCTGTACTGATCAGTTATTCTAGGCAGTGGCATAACATAAAATTGCTCCCATCTGGAAAGACGAATCCGCCTTTGTCTCTTCTGAACTATTCTTTCCATTCTCTCAGGAATTTCATACTGGTCACGCAACTTTTTATACCATTTCATGTCAGATAGGGGCACAAAGTGTTTAATCATTTTATCTTCATCAAGAACTGTTGGATCATGTGCACGGGCTTCAGGGATTTCATAAGGCATACGTATCTTCTTCTCTTCCTCtataattttctttatttcttgaTCCTCTTTATCAGAGATATCAAACTCACCCTGCACATGCTTGGTGCTAACTGCCGGTTTATATAATTCCGCAGCTTCTTTCAAAGCCTCTTGTGCTACAGGATTGAGTGCAACAACTTCAGCTTTTGAGAACTCTTGTGCCATTTTCAGTGTCTTTTCTATTTGGTTTCTTACATATATATGTCTTTCTTCCTCGCTCTTGAACTCCCTCCTTGTGTATGTTAGTCGTTCAACTTTGAGAGTAGCTTGACAGCTTGCTGATCCAGCTGTATTTGTTGCAGTGACTCTGTATGTTCCTGAATCCTCTATGAGAGTTTCTCTAATATGTAGAATGAAATAGTCTACATCCTCTTGAACAACTTCAACTTGTGGTCTGAACTCAAGAGGTTTGCCATTTTTCTCCCATTTCAAAGTTGGTGCTGGGGTTCCTGATACTCTCAAGTCAAAGCGGACGCTCTGCCCCTCAACACAATCAATATTGGCTAAGAGACGTTTAAACATTGGTCTCATAGTATCCTCAGCAACAGCATGTGGTGCTACATTGAGACGGGCTTTGCAACTGTCTTCGCCAAACTTGTTGTTTGCTACAACAGTGTATTCAGCATCATCACTGAGGTCAACATTGTGTATCATGAGCTGATAAAGACCCTTGTCACTTGTGAATGTGTATTTTTTAGGATCTGGCTTGATTCTGTGCCCAGCCTTTAACCATGTAACACTTGGCTCTGGATGGACAGTTATGGTCACACCAAAGCGCACATCTTCACCAATGTATGCTGAACGATTGAATAAAGGCAAAGTAAACTCTGGTGGCCTCTGCAAAATTTTGCTTTTGTCAATTCTACGCCTGGGTTTCTTCAGCGAGCGTCCAAGGTAGTACTCACGGAAGGACCTGACAGTCTCAACAAATAACTCAGCATATGCATTGTCCTCCCTGTCTTCACTGACAACCTTGCATCTATATAATCCATCATCACATTCTTCAATGTCTTTAACATAGATGCTAGCAACACCATTAGCATATGTAATTTCATATTTGTGGCTTGCAGTTAATTTGCGGGAACCAAAGTACCAGGTCACTTCAGTGTTTCGATCATAGTTTTCAATGCAGCACACAAACCTGACATGTCCTCCCTCTTCAGCAGATCCATGCATGATAGGTCCTGCTCTCAAGCCTTGTTGAGGATGTCCAATTTTCACTCTTCCAATGGAAACATTTTTCTGGTTTCTGTAGCCACCACCATAGGCAACACGTGCTGATGAAACAACAGTGCTCCATTCCTTTTTCACAAGTGACTGGTAGTATCTTTTGTGTCTCAAAGTCTTGATGACTTTTGAACTAACATGTTCCAATTTCATCCTGAGCCAAGGGTGCTCCAAAGCTTCTGAGGCAGTCATACGTAGCTTGGAGTCTTTAGTTAACAGTCTGTCAACAAAGTCCATAGCCTCAAGGCTGGTCTCTTTAAAGGCTTCACTATCAAACATATACTCTGCATTTGAAATGTGCTCAATCATTTTCTGGTTTGATTCAGAAGCAAACGGATTAAGTCCACTTAAGAGGACGTAAGCAAGAACACCTACAGACCACATGTCAGTGGCAGTTGTTACAAAATCACTGGTGTGGATTTCAGGTGCATAGTACTCTGGGGCAGTAAACTGAATCCTAATGTTTTCTCCAGGTGTAAGCAACCGAGCCTGGCCCATTTCAATGATCTTGATTGTATTGCTTTTCCTTGTGGAATAAATAATGTTGTCAGGTCTGATATCAAAATGACAATAGTTTTTGCTATGCAAGAACTTCAGGGCTCCACAGACTTGTCTCAGATACTGAACAATTTCTTGCTCAGTGAGGTCAAAGTTTATACCAAGACGCTCAAAGATGTCCATACCAGAAAGGAATTCATAAATAAGAACGTATTCTTCCAAGCTATCAAAGGATTCATGAAGATACAGAAAGTTTTTATGTCTTGCAATATTGAGTGTCTCAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075181 lncRNA upstream 394559 42348958 ~ 42500284 (+) False XLOC_037383
TCONS_00073563 lncRNA downstream 896606 43798143 ~ 43801464 (+) False XLOC_037388
TCONS_00073565 lncRNA downstream 899339 43800876 ~ 43879792 (+) True XLOC_037388
TCONS_00073574 lncRNA downstream 1529435 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA downstream 1553606 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00073584 lncRNA downstream 2094110 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00073556 mRNA upstream 244220 42546504 ~ 42650623 (+) False XLOC_037384
TCONS_00073557 mRNA upstream 244220 42606681 ~ 42650623 (+) False XLOC_037384
TCONS_00073559 mRNA upstream 244664 42607146 ~ 42650179 (+) True XLOC_037384
TCONS_00073558 mRNA upstream 245245 42607138 ~ 42649598 (+) False XLOC_037384
TCONS_00073555 mRNA upstream 623883 42270043 ~ 42270960 (+) True XLOC_037382
TCONS_00073562 mRNA downstream 896365 43797902 ~ 43880326 (+) False XLOC_037388
TCONS_00073564 mRNA downstream 898292 43799829 ~ 43883267 (+) False XLOC_037388
TCONS_00073567 mRNA downstream 1133253 44034790 ~ 44088067 (+) False XLOC_037390
TCONS_00073568 mRNA downstream 1133260 44034797 ~ 44088067 (+) False XLOC_037390
TCONS_00073569 mRNA downstream 1133453 44034990 ~ 44080500 (+) True XLOC_037390
TCONS_00073552 other upstream 769459 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 799666 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073545 other upstream 856524 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073540 other upstream 1161233 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073538 other upstream 1211833 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073560 other downstream 429858 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073561 other downstream 873714 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073566 other downstream 953958 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073582 other downstream 2030638 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 2094732 44996269 ~ 44997423 (+) True XLOC_037398

Expression Profile

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