RNA id: XM_039795259.1


Basic Information

Item Value
RNA id XM_039795259.1
length 9677
RNA type mRNA
GC content 0.53
exon number 53
gene id dmxl2
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18185901 ~ 18236296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGCAGAGATCCCGCTGCCTCGGCTCTCACGATTAATCGTAGGGATGGCGTTGACAGCAAGAGGCGACGGGCGGCCAgttttacatgtttacatacattacagGACCGggtaaaattacatttatacgGGTCGAACACAAATCCACTGCAACCTTACCGTTTGTTGAGGAAGACGACGCTCCCAGGCCGAGGACAACGTTGACATTACTGATGGAATTCCCAGTCGTTGCTAGATGGAGAAACCGAAAGGGTGGACTCGTTATTAATAATTAAACAAAAACCCATCTGCTGCTAAAATATAAGGAAAATGCATCTGCATCAGGTGCTGACGGGAGCGGTAAACCCTGGAGATTCCTGCTATTCGGTGGGAAGCGTGTATGACATTCCTTTCACGGCCTATGGCTCAGGTTGTGATGTAGTGATCTTGGCCAGTGACTTTGAGTGTGTGCAGATTATCCCGGGAGCTCAAAATGGAAACATACAGGTGGGCTGTGTGGAGTGCTCCCACCAGCTTGGCAGGATTGCTGCATCGTACGGAAACACAGTCTGCATCTTTGAACCTCTTTCTACCAACCCAAACAAACGGCACAAGCAACTTAACTATCAGTGGCAAAAGACAGGACAGTTTTTCCTCGATGCCATCACCTACAACCTTGCCTGGGACCCACAAGGGAACCGTATCCTAGCAGCAACTGAGCGGCTCCAGCTGTGGGCTCCTCCACTGACAGATGCCCTGATAGAAGAGGAGGATGGACAGTTGAATGAGGACAAGCCCCACCCTGTCCTCAATGACTGGAAATGTGTCTGGCAGTGCAAGACTGCTGCATCTGTTCACGTTGCCAAGTGGTCTCCTGATGGGGAGTACTTTGCAACAGTTGGGAAGGATGACTGTTTACTTAAGGTGTGGTATCCCACCACGGGCTGGCGTTCTGCAGTGGTGGTCCACGACCCCTCCGATAAAAAGCCTCTTCCTGTTCACTTCTCCTTTGTTTACCTGGCCCATCCCCGCTCGGTCACTGGTGTGTCCTGGAGGAAGACCAGCAAGTACATGCCCAAGGGTTCGGTGTGCAATGTGCTGCTGACATCCTGCGAGGATGGTGTGTGTAGGTTGTGGTCAGAGACTGTGCTACCAGACGACAGCCTGCTTGGGGGACAGATCTCTGAGAACACGCACTCCTTCAGCTCCAGCCTGCCAGGCCTGGCAGGCAATAAGGACAAGATCCAGCATGCTTTGGAGTCAATCCACCACCTGAAGCATCTGCGCCGGGGCCGGCGACGATCCTCTGCTCTGGTGGCACACTGTGAGCTGCTGCCCTCTCAGCTTGGCACGCAGGATGCACACACTCACCGCCACATAGCTCATCATGCCAATGCCCTGTGTCACTTCCATATCTCAGCCAGTATTAACCCCAACACAGATATCCCATCAGTGCTGCCTGACTCTGCAGTGTTCAACCCAGACGATGGCAATGGTGGCGGAGGCTTCGTCGTTCACTGGCTCAACAATAAGGACCTCAGCTTCACTTCCTCCATGGACCTGTTTATGCTGCAGCTCCGTAAATTCTCTGAACAGCAGCTGGACCAGACTACTGAGGACCCCCTGGACCCCGAAGGATCTCCTATGAAGTTTGACTTTGGTACAACCCACAACCAGGCCAACACACGTTCCTTAAAACACATTAGCTTAAAAGTAACATTATGTTGTCAACACATATTTATTTCTGGCTTTTTAGAACTGGACGAGATGTCTGACAAAGGGTCCTCAGAGCACGGTGAAGAGGGTGAGCCAGGGGAGCAGGGAAGCACCAAGGCATCCTCCCCAGGATCCAGCTCCAGCATGCCATTGCCCTCCATGCTGCTGGAGAGGAAGATGGAAACTCTGATCACAGAGTGGAACAAGAGCCCAGATATGTTGTTCACCATCCACCCTACCGATGGATCTTTCCTGGTTTGGCATGTGAAGTACTTGGATGAATTCAACCAGGGCATCTTTAGACAGGTTCAGGTGTCCTTCTCCTCCCGTATTCAAGTGGCTTTTCCTACAGGTGATGCCAATTCACTGAGTAAAAACATCCTGATGTACGCCTTTACTTTGACTGAGGGTGAAAGTACCAGTGCAGGGGACCAGGGGAGGATGGTCCAGCATGTCTCCCACTCTGCTTCAGCCTCGGCCGGCCTCTGTTCACCCGCACTGGTCCCCGCTCCCAACCCTCGTCGTGGCATCAGTCCTGCTGTCATGATGGTCTCAAAGCATGTTGATGGATCTCTCAATCAGTGGGCAGTGACATTTGCTGAGCGCTCTGCCTTCTCCAACGTACTGACTGTGTCACACAAGTTCCGTTACTGTGGCCACCGCTTCCATCTGAACGACCAAGCCTGCCACACagtgctgccactgctgctgacCTCCTCTCACCATAATGCTCTGCTCACCCCTCCCTCAGCCCCTGGCAGCCTGGAAGATGAGCAACCTCCTACCTTTCCCCAACCAAAGGGATTTCCCAGGAAGCAGCTTCGTAATGCGGCTACAAGGACATTCCATGACCCCAATGCCATCTACAGTGAGCTTATCTTGTGGAGGGTGGACCACATTGGACCCCTGTCTTGCACTGGAGGGGTCTCTGAACTGGCCCGTATCAACTCTCTGCACACCTCTGCCTTCAGCAATGTTGCTTGGCTACCTACACTAGTACCCAGCTCTGTACTTGGATCCTACTGTAACAGCGCCAGCGCCTGTTTTGTGGCATCAGATGGTAAAAACCTGCGTCTCTATCAAGCTGTGGTGGATGCCAGAAAACTACTGGATGAGCTGTCAGACCCTGAAACGTCTaAACTGGTGGGCGAAGTTTTCAACATTGTCAGCCAGCAGTCCACTGCCAGACCTGGATGTATCATAGAGTTGGACGTCATTACAAACCAGTGTGGCGCCAACACCCAGCTGCTGCATGTCTTCCAAGAGGACTTCATTCTAGGTTACAAGCCTCAGAATGAACCTGAGGCATACACACCGGCCTTTCCATCTGGTGAAGATTACCAACCTGCCCCCTTCTCTGAGAAGTTCTTCCTGGTGGTGATAGAAAAAGATCTCAACAGAAACTCTGTCTTGCAGATGTGGCACCTGCACCTCAAGTCTGTGCAGGCCTGTGTTGATGAGCTGACCCCAGACTTTAGCTTCCAGAGCCAGCTAATGGTTCCCAGTCAAGTTGTGAATGCTGACTCTTCTCCAGAGACCTCACCTATCAGACCACTGCCTCGGTCAGCCTCTACAGCCAACTTGCAATCAGCCAGCAAACTCATCCTCAGCTCCAAGCTGGTGTACAGCAAGAGGCTCGACCTGCCCCACGGGGTGGAGGTTACCAGGGCCACCCCCTCTGCAGGTCATCTGAGTTCCTCTTCCATCTACCCTGTGTGCCTGGCTCCGTACCTGATTGTCACTACCTGCTCTGACTCTCGCGTGCGGTTCTGgcgctgtgctgtggaggggGATGACGGGTATAGCGAGGAGGACCGGGACAACCATGCGTACCGCTGGGAGCCCTGGGACCTGATGAATGAGGAGGAAGACAACaacagtgctgtgtgtgtgtctggacgGCCTGTTGCTGTGTCCTGCTCCTACATTGGCAGGCTGGCCATAGCCTTTAAAAAGCCACGACACGGGCAGCTGCAGGGTTCTGGACAGGACTTCTCCATGCATGTGTCCATCTATGAGTGTGAATCTACTGGTGGCTCAGAGTGGGTTTTAGAGCAAACTCTCCACTTGGACGACTTTACAAGACCCTCGTCAACCCTGGATCCAAGAGTCAGTGTGGACTCCAACCTCTTTGTCTACAGCAGGTCTGACCTGTACATGAGCAGAGACCATAGCTCCCCCAACATTAAGCACTACGTTCACTTGGACTGGCTGTCAAAGGAGGATGGATCTCACATCCTCACTGTGGGAGTTGGATCCAACATTCTCATGTACGGCCGTATCTCTGGCGTGGTAAATGAGCCGACTAGCAGCAAGGAGGGGGTGGCTGTCATCACCCTTCCTCTAGGGGGCAGTATCAAACAGGGCATCCGCTCACGCTGGATCCTGCTACGGTCTGTGGACCTCCTGTCCTCCGTTGACGGCACGCCGTCTCTGCCAGTCTCCCTGTCCTGGGTGAGGGATGGCATCCTGGTTGTGGGCATGGATTGTGAAATGCATGTGTATGCCCAGTGGCATCAGGACAAGAAGCctggggagggagaggagggcaACCTATCATCTGCAGACATTGCTGGAGGTCAAACCACGACGGTTTCCTCCTCGGCCTTTGAAGGGAGAGCTAGGTCTAAGAGTGTGTTTGAAGGGAGTGCTGCAGTTGATGAGGCCCTTCGTGCCCCGGCAGGACTTCAGGAAGGGGGACTGTTTGAAGCTGCTCACTCCCTGTCTCCGACTCTACCCCAGTACCATCCCACCCAGCTGCTGGAACTCATGGACCTGGGCAAGGTTCGCCGTGCAAAGGCCATCCTCGCTCACCTGGTGAAGTGTATTGCCGGAGAAGTCGCTGTAGTGAGGGATGTGGAGGCCGGTGAGGGCGGAGCCAGGAGACATCTGTCCCGTACCATCAGTGTGACTGGCAGCACAGCAAAAGACACCATTGTGGCTGGCCGTGATGGGGGCAGGGACTACACAGAGATCAACTCCATCCCTCCCTTGCCCCTTTATTCCCTCATATTGGCTGACCTGGACACCTCGTACAAGGGAGCAGAAGAGGCTGCTAAGGGAACTAAGGGGGCCGACGGTGAGGGATCCCAGAAGTCCGCAGAGGACCAGTATGCTGACCTCTTCCAGGTGCAAACAGTTACCACAGATGATTTTGTGAACTTTGCCACCGACAAGCCAGAGAGGAAGTCACGAGTTATCAACCTATCTCAATATGGACCTACCTACTTTGGTCCGGAGCATGCTCAGGTATTGTCCAGTCACCTCATGCACTCCAGCCTACCAGGACTGACCAGACTAGAGCAGATGTTCTTGGTGGCCTTGGCTGATACTGTTGCAACCACCAGTGCTGAGGTCACCAGCTCCACTGATCAACAGTACACAGGTGGCGAGGCTCTCGATGAGTGTGGACTGAGGTATTTGCTGGCCATGCGTCTTCATACCTGTCTGCTCACTTCCCTGCCCCCCCTCTACCGCATGCAGCTGCTCCACCAGGGCCTATCGACATGCCACTTTGCATGGGCCTTCCACTCGGAGGCAGAAGAAGAGCTGCTGAACATGGTCCCAGCCATGCAGAGAGGCGACCCCCAGTGGTCTGAGCTCAGAGCTGTTGGAGTGGGATGGTGGATACGCAACATCAACACTCTGAGGAAAATGGTGGAGAAGGTAGGTAAAGCTGCGTTCCAGAGACACAACGATCCTTTAGATGCTGCTCTGTTCTTCTTGGCCATGAAGAAGAAAGCTGTGCTGTGGGGGCTCTTCAGgtCTCAGCATGATGAGAAGATGACTCAGTTTTTCAAGAACAACTTCACTGAAGACCGCTGGCGAAAAGCAGCTCTGAAAAATGCTTTCTCCCTGCTGGGAAAGCAGCGCTTTGAACAGTCCGCTGCCTTTTTCCTACTGGCTGGATCACTCAAAGACGCTATAGAGGTGTTgctggagaagatggaggatcTCCAGTTAGCCATGATAGTAGCAAGGCTGTATGAGGCTGACTTTGAGAATTCATCCACCTGCCAAGGCCTCCTTTATGAGAAGGTCCTGGGCTGTAACAAGGATGGAAGTGGTTACCACTGTTCCAGACTGCACCCTGACCCGTTCCTCCGCAGCATAGCCTACTGGATCATGAAGGATTATACCCGAGCCCTGGACACACTGTTGGAACGAACACCCAAAGAGGATGATGAGAACCCTGATGTGATGGTGAAAGCTTGCAACCCTGTGGTGTTTAGTTTCTATAACTACCTGAGGACACACCCTTTGATCATCCGTCGCCACTTTGCAAATCCAGAGGGTACTGTGGGCCTCACTGCTGAGAAAAGCAGCGCAGTTGAGATCAACCTCATAGAGCGCAAACTGTTCTTCACTACTGCCAATGCACACTTCAAGGTGGGCTGCCCAGTTCTGGCTCTGGAAGTGCTTTCCAAAATACCCAAAGTCACCAAGAAAGCTAGCTCCTCACCTCTCAGCAAAGCTTCATCCAAAGCCAACTTGAACTCGAGCCAACCCCTGGAAAATGGCACCCAGGGAGGCGTGGAATGGGGCTCCCCTGCGGCCAATGCCTGGGGAGCAAATGATAGTGTGGGTGGGTTGGACTGGAGCCAGCCTTTGGTCAAGGTGGAGGAAGACATTCTGAAGCTGGACTGGGAAGAGGACAAggaagatgatgatgaggatgatgatggtCTGACCATGAAGAAACCAGGGGCTGAGACCAAAGAAGACAAAGTTTTAGGGAGTGGCGGCCCCAACCTGCAGAGAGAGGACCCACAGGGTGAGTCAGAGGTGGACGTGATAGCAGAGCAGCTGAAGTTCCGCGCCTGCCTGAAGATCCTGATGACAGAGCTGCGTACTTTGGCCACAGGCTTTGAGGTGGATGGAGGGAAGCTCCGCTTTCAGCTCTACAGTTGGTTAGAGAAGGAGATAGCAGCCATGCATACAATCTGCAACTACAAGGTggaggggaaggaggaggaCTCAGAGGTGGAGCGCTGGAGAGAGCGTACAGCATCAGTGGACATATCAGACGATGCCCTGGAGCGCACGGAGGCCGGGGCCTACGAGCGTCACCAGATGGAGCGACGTCGTCTTCAGGCCAAGCAGCAGCACTCAGAGAGGCGCAAGGCGTGGCTGAGGAAGAACCAGGCCCTGCTGAGGGTGTTTCTGTCCTACTGTAGCCTTCATGGAGCCAAGGGAGGAGGAGTCACCTCTGTTCGCATGGAGCTTCTATTTCTTCTGCAGGAGAGCCAGCAggaGACCACAGTTAAGCAGCTGCAGTCTCCTCTGCCTCTGCCTACTACACTGCCTCTGCTATCAGCTTGCATTGCCCCCACCAAGACGGTCATAGCCAATCCAGTTCTTCACCTCAGCAACCACATCCACGACATCCTCCACACCGTCACCTTAATGGAGACCCCGCCGCATCCTGACATCATGGATGATCGGGTGAATGCTCTGCACACTCTAGCAGCATCTCTGTCTGCTTGCATCTATCAAGCACTGTGTGACAGCCACAGCTACAGCAGCCAGACAGAAACCAACCAGTTCACGGGGATGGTGTACCAGGGCCTGTTGCTCAGTGAGAGGAAACGACTCCGTACAGAAAGCATTGAAGAACATATAACTCCCAACTCTGCTCCTGCACAGTGGCCAGGTGTGTCATCCCTGATTTCTCTGTTGACGTCTGCCAGAGAGGAGGACCAGCCGAGGCTCAACGTGCTGTTGTGTGAAGGGGTCATGGCCGTTTATCTTGCACTGCTCATTCATGGCCTGGGCACTCACAGCAGCAATGAACTCTTCCGACTTGCAGCACATCCCCTCAACAACCGCATGTGGGCCGCTGTCTTTGGGGGAGGGGCCAAAGTCGTTATTAAGCCAAAGAGGCCTGAGGCCCCACCAGTGGCTCCCCCTCAGCCCCCAGCAGAGGATGTGGACCGATACAGACGTAGGTTCAACATGAGGATGCTTGTTCCTGGACGCCCTGTAAAGGAAACACCAGCCACCCCACCTCCTGTGCCCGCAGAGAGACCCGCATACAGGGAGAAGTTCATTCCCCCAGAGCTGAGCATGTGGGACTACTTTGTGGCCAAACCCTTCCTGCCGCTGTCAGACAGCAATGCTCTGTGTGACTCAGACGAAAGCGGCGCAgaggatgatgaagatgatgatgacgcCTTCCTTTCTGACACACAGATAACGGAGCACTCTGACCCCAACTCCTACAGTTGGGCTCTGATCCGCCTCGTCATGGTGAAACTGGCTCATCACAACGTCAAGAACTTCCTCCCTCTCACCGGCCTTGACTTCACAGACCTGCCAGTCATCTCCCCTCTTAGCAACGCTGTGTTAAAGACTATAGAGAATTGGGAGCAGCTTCTGCTGGAGCGAATGAACAGCTTTGACGGGCCGCCTCCCAACTACATCAACACGTACCCTACTGACCTTAGCGCAGGAGGTGGCCCCGCCATACTCCGACACAAGGCCATGCTGGAGCCAGACAACACGCCCTTCAAGACAAAGAACCATCAGTCCTTTCCAGCCCGACGTCTTTGGCATTTCCTGGTCAAACAGGAAGTTCTTCAGGAGACTTTGATCCGTTACATCTTTACTAAGAAAAGGAAGCAGAGTGAGtCTGTAGAGAACCATATGGACCGTATAAGCCCAAACTGCATAGCAGGAGCTAGCAGTCCCTATAAGGTGGAGGCAGATATGGGCTACCCAGGAGGCAAAGCTAAAATCATTCATAAGGAGTCTGATATAATCATGGCATTTGCCATCAATAAGTCTAACTCCAACGAGATAGTGTTGGCCTCCACTCATGATGTTCAGGAGGTGGATGTGTCTACTCTGGTGGCTGTCCAGCCCTACACCTGGATAGGAGACGACATGGATAAGGAGTCCCGCAGCTCTGACGACATAGATCACCGTTCTTCTCAAACCAACATCGCCCAGCCAAACTCTGTGCCCTTTGCACCACCGCAGATGCCAGTCTCTGCATCCATGCCATGGCTCGGCAGTGGGCAGACCAGCATGGGAGCCAGTGTGatcATGAAGAGGAATCTAAACAATGTGAAGAGAATGACATCCCATCCCATATATCAGTATTacatGACAGGGGCTCAGGACGGTAGTGTGAGAATGTTTGAATGGAACAGACCTCAGCAGCTCATTTGCTTCAGACAAGCAGGCAACGCTAGAGTCACCCGGCTCTATTTCAACTCCCAGGGCAataagTGTGGAGTTGCTGACGGAGAGGGCTTCCTCAGTCTCTGGCAAGTCAACCAGACATCCTCCAACCCCAAACCCTACCTGAGTTGGCCGTGCCACACTAAGACCTGCGGTGATTTTGCCTTCATCACGTCCTCAAGCCTCATCGCCACTGCCGGACAGTCCAGTGATAACAGAAATGTTTGCCTGTGGGATACTCTGATTTCACCTAGCAATACCATGGTCCATGCGTTCCCCTGCCATGAGAatggggccactgtgctgcagTATGCTTCTAAACAGCAGCTGCTCATCACTGGAGGAAGAAAGGgatttgtgtgcgtgtttgatATCCGCCAGAGGCAGCTGCTACACACTTTCCAGGCCCATGACTCAGCCATCAAGGCCCTTGCACTGGACGCCTTCGAGGACTTCTTCGTCACTGGCTCTGCAGAGGGCAACATGAAGGTGTGGAAGTTATCCGGCCATGGACTCATGCACTCTTTTAGCACCGAGCATTCCAAGCAGTCTATCTTCCGCAACATCGGTGCCGGTGTCATGCAGGTGGAAACGCGGCCCGGTAACCGCATCTTCACCTGTGGAGCAGACGGCACCCTAAAGATGAGGGTCCTCCCTGACCGCTACAATATCCCCAGCAGCTTGGTTGACATCCTGTAACGCCTACTTCCACTTCTGAGGGTCCAAAGAGAAAAGCGacggaaaggagaaaaaaaaacaacacaaaaagctTACGTAACACTTGCTAGGCATTAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638782.1 lncRNA upstream 4700 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 266705 17918900 ~ 17919196 (+) True G28083
TU37335 lncRNA upstream 296684 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA upstream 296684 17888850 ~ 17889217 (+) False G28065
TU37336 lncRNA upstream 309728 17871746 ~ 17876173 (+) True G28066
TU37466 lncRNA downstream 208520 18444816 ~ 18445296 (+) True G28163
TU37504 lncRNA downstream 371009 18607305 ~ 18609878 (+) False G28195
TU37505 lncRNA downstream 371009 18607305 ~ 18615809 (+) True G28195
XR_005638784.1 lncRNA downstream 609973 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 817828 19054124 ~ 19055004 (+) True G28393
XM_039795255.1 mRNA upstream 297177 17886241 ~ 17888724 (+) True LOC120555992
XM_039795345.1 mRNA upstream 315385 17854838 ~ 17870516 (+) True myef2
XM_039795346.1 mRNA upstream 315385 17854838 ~ 17870516 (+) False myef2
XM_039794856.1 mRNA upstream 362405 17762238 ~ 17823496 (+) True fbn1
XM_039795266.1 mRNA downstream 12479 18248775 ~ 18252359 (+) True LOC120555996
XM_039794050.1 mRNA downstream 37392 18273688 ~ 18295514 (+) True tnfaip8l3
XM_039794703.1 mRNA downstream 70149 18306445 ~ 18321304 (+) True scg3
XM_039794704.1 mRNA downstream 70150 18306446 ~ 18321304 (+) False scg3
XM_039794638.1 mRNA downstream 125853 18362149 ~ 18380346 (+) True leo1
XR_005638756.1 other upstream 443167 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 2699480 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2739509 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4948082 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 5075562 13109757 ~ 13110339 (+) True G27086
TU37478 other downstream 325599 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1250950 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1261442 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1261797 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 1276060 19512356 ~ 19520218 (+) False ercc3