RNA id: XM_039795269.1


Basic Information

Item Value
RNA id XM_039795269.1
length 3237
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC120555999
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5816034 ~ 5854489 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGACCGGTCTCCATTTCGCAGCGGACACTCAGACAACGCAGAGCCGCTCTCCGGACGAGCCGCGCCCGCTGTAGGACCCTCCTGTTCCCCGcaacttttctctctctttgtgcctGGTTCAGGCTGTTTATCCCCGCTGTAAGTATGAGTGTAGCGGTGGCAGAGGGCTGCTTTCTGTCCGCTCTGCAGCCCAACTCGTCCTGCACCGCCTATGGGCTTCCCTCGGACGGTATGTCTCCAGCCAGGAGGGTCCGAGAGCAAGTCCGGATGCGACTGGCTGAGAAGAAGTCCTCCTCCCTGCCCAGGCTGGACGACTCTCTGTTTGGATCAACAGACTACAGCTTTCCTGAGGCAAAGAGCTTTTCCCACAGCCACGGTTTCAGTTCCAGATCCATGATACACACACCCAGCCGCGTCATGGCTATGCCCACAGCACCCCTTCGCTCCGGTTTCTCCTCTCGCTCTGCTGTGGACAGCAGCTCCAAGGTGAGCCATAAAGCCTCCAGCACGGCCCAGAGCAGCTTTCGCTCCTTCCAGTCACAAAGCAGAAGCAGACGCTCCAAGTCACTGTGCCAAGCAGACCAGGAGGCCCTTCCTCTCACTGTGCTGCCTCCTCCAGAGAACGGCTCCTACATGATCACGGTGCCTCCCCCTGGCACCCTAAGGCGCAGCCTCAGCGGGACACTGGCCCAGGACAGAGGCTGCTGGCAGGCCGAGGAGCTGCCGTGTCAGTACACCTACAAAGGCCCGTCCCACCGCACCATCAGCAGAATCACCAaccgacagcagcagcagcagagctctgCCTTTGGCCAGGAGGGCTGGGTGGGGACTGGCAGGGGCGTCCCCATGGCAGGGGACGGCTGGGGGACACAGTGGCAGCAGCATGTGTCCAGGGCCAACCATGCCATGGGGACGGGCCAGTACCAAGCCCCTCTCCACCGGGCCGCCTCGCTCCGCAGTGTGAGGAGTGTCGGGAAAGGTGTGGATATCTTGGATGGAGCATCGATACACAGCAACGACCCACTGGAAGAtatgcaGAGTCTGGACATGGCTACAGCTGTCAGATATCTGTCTGAGTCCGATGATGCCTTGCAAGTTCTGGGAGCTGCATACATACAACACCAGTGTTACCATAGCAATGATGCCAAAAACCAGgtccgTGCTCTGCATGGCGTCCCAGCTCTTGTTCAGCTTTTCTCCAGTGACAGCCTAGAAGTGCAGCGCTTTGCCACCGGCGCCACGAGGAACCTCATCTACGAGAATGCTCAGAACAAGGCGGCACTCATCGACGCCGGCGGAGTGATGCGTCTGGTCAGCATCCTGAGCAAACCCGACGAGGAGCTTCGAAAGACCATCACAGGTGTCCTGTGGAATCTGTCCTCCAGAGACAACCTGAAGGAGAAGCTGTCCAAAGAAGCTTTATCAGAGCTGACAGAGAACGTACTCATCCCTCTGTGCAGCAGCATGCCACTCAGCCCGTCTGAGAAAGACATCTTCTACAACACCAGCGGCTGCCTCAGGAACTTGAGCTCAGTCAATGAGAGGACGAGACAGAAGATGAGAGACACGCGAGGCCTGGTGGACTCTCTGGTGTCCTACATTCAGCAAGCGGACAGGGCAGATGACAAGGGTTTGGAGAATTCATTGTGTGTGATGAGGAATCTGTCCTACCAGCTGTACACGGagcttcctccctctgtccgaCACCGTCTGGAGGGCCCAACGAGAGCCTCCGCCTCCAGGGACAGTGAGGCCATCGGCTGCTTTACTCTGTATAACAAAAAGCACACTGAGCGTAACCAGAATCTGTCCATATTGTCTGAGGTGTCCCGACAACCTAAGGGCTCCGAGTGGCTGTGGCACCCTAATGTGGTGGCGCTCTACAAGCTCGTTCTGCAGAACAGCGACAGCAGCTCCACCAGCCGCGAGGCTGCCATAGGTGCCCTACAAAATATCACTGCAGGGGAGGCCAGGTGGTCATCGGTACTGAGTGGTGTGGTGGTGGAGCAGGAGAGGATGCTGCCCATCCTGCTGGATCTGTTAGACACCAACAGTGACATGGAGCTGAGGTCTCTGACCGGCCTGCTGAGAAATCTGGCCAGGCACTCCACCAACAAAGACCACATGGCTAAGAGCATGGTGAACATTCTGGTGTCCAAGCTGCCCAGTGATGGCCTGCAGAAAACACCATCCAGCGAGGTGGTGGTCAACATCTGTGGAGCCCTCAATCACCTGGTCACCGGCAGTTCCTTGGCAGCCCGTGACATCTCATATTTCAACGGCTTGCCCAAACTGTTGGGCATCAAGACATCCCATGATAACAGCTCTGGGAGTCTAAAAGCTGCCAGAGCAGCCTCCACTGTCCTCTGCAACATGTTCCATTACAACAAACTGCACAAGGACTACAAACTGAAAGGATTTGCCAGACGAGACTTCACAGATGCCGCCATCTAGGCTGCAGCACATTACGTGATTCACCCTGAGCTTTCGACCTCAGGATCAAGGTTGCTGTGAGGAAAAAGACGAGGAACGACAGTTGAATTCACTGAGCAGATTATCTTACTGTGACGGACTTACAGGAAGAGAAAAATGGACTGGAGCCAATGGACTTAAACCGTGTCCTCTTTCAGGTGGCTGGCTGTGTGTTTAACTTGGCTTAGCTTGCACTAGATAGCCTGTGATGATGGGAATTTAACGGTTTCAACACACACAGTGGACTTCACCCCCAAATATACCGTTATGCTCTTTGACTGATATACTGATATGTTGTTTTGACACTGATTCCAATTTATTTTaaactaatgtttttttatagcTGATATATGATGCCCacactagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggcttaaAGACATAGcaatgttggtcagtctgtccaCCCGTAGGTCCagactagggtgaccagacttCCCCGTTTTCCGGGGACAGTCCCCAGTTTTGGTGGCGTGTCCCCAGTTGGAGTTGTTTCCTTGGAAACATCCCCGTTTTAAACGACTGTGTGTTATAAACAGGCCGAAAAGTGAAATGATATCTTATGTGGCAAGACTGGGCAGCAGAGCCTACCAGTTGacatcttaaaggggtgatagaatgattatatagggtatttcacactgttccttatggtctcctaatggggtatgtaacactggttgggctgaaaatggcctggttgatattt

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04979 Cholesterol metabolism
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34365 lncRNA upstream 140046 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 183004 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 925038 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 978767 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 1133564 4682124 ~ 4682470 (+) True G25541
TU34421 lncRNA downstream 8170 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 38232 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 56740 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 180967 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 182370 6036859 ~ 6037969 (+) True G25710
XM_039796037.1 mRNA upstream 11212 5764543 ~ 5804822 (+) True LOC120556427
XM_039796036.1 mRNA upstream 57785 5733290 ~ 5758249 (+) True LOC120556426
XM_039794571.1 mRNA upstream 144011 5659480 ~ 5672023 (+) False LOC120555666
XM_039794570.1 mRNA upstream 144011 5663719 ~ 5672023 (+) True LOC120555666
XM_039794563.1 mRNA upstream 161779 5643148 ~ 5654255 (+) True zgc:162297
XM_039795538.1 mRNA downstream 14566 5869055 ~ 5884023 (+) True zgc:153993
XM_039795087.1 mRNA downstream 63067 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA downstream 63084 5917573 ~ 6021420 (+) False ano1a
XM_039795080.1 mRNA downstream 64266 5918755 ~ 6021420 (+) True ano1a
XM_039795083.1 mRNA downstream 64266 5918755 ~ 6021420 (+) False ano1a
TU34243 other upstream 1240389 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2030492 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3732715 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3973223 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 179720 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 197398 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 198326 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 410485 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 432559 6287048 ~ 6288077 (+) True G25743

Expression Profile