RNA id: XM_039795301.1


Basic Information

Item Value
RNA id XM_039795301.1
length 3256
RNA type mRNA
GC content 0.40
exon number 1
gene id fibinb
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14702979 ~ 14706234 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGTAGCAGAGAGGTATTATTAGCCAAAAACCGAAGCGCGGCACTTGAGACATCCAGATGTTGCGTTTGAGGCACCAAGTGAAGTCGGGAGTACAACTTTTTCCACGCTGAAACCAACTTTAATACATCGCTTTTCCTGTTTACCAGCAGTAATGGAAACTGACAGGCTCGATTAAAGGAAGAGAAGTGAGGCTGTTAGAACACTTTCACGCCCTTTTTACCTGTTTGGACAAAAGGACAACAACAAAGCCTGAATTTAACTGCGCAGCTTTGACGTTTAAATCTGAttgaaatgtttgtgtttctaCGCCGGGTCGGAGTTAAATAGTCCACCAGGCTGACGCTGTCGCTAAAATAAACGTTTCAAACTTTAACATTTAATATCTGTCAGCGTGTTTGGGACAAGTGGGCATCATGGCTTTTCTTCACTTGCTCCTGTGTGCCGGGGTGTTATCACTGCCTATGTGTGGAGCCTTTTTCCGCGGACCCTTACAACCGGAGATGTCTAACGGCACTTTTCATCATTATTTCGTGCCGGACGGAGACTACGAGGACAACGACGACCCGGAGAAATGTCAGATGCTTTTCAAAATGACCGACGAGCGAAAGTGCGGTCTCGACGAGGACCAGGACGCCGTCATACGGGATGATTTCACTATCATCAAGAGGCAGATAGAGGACTCGGCCAGGGTGCTAGAGGGGATCGGGAAAAGCATCTCGTACGACCTGGACGGAGAGGACAGCTACGGGAAATACCTGCGGAGGGAGACGGCTCAGATAAGCGAGGCGTTTACAAACTCGGAGAAATCTCTGCTGGAGCTGGAGGTGAAATTCAAGCAGAGCCAGGAGAGCGAGCTAAAGGAGGAGCACCGGCTCAACGAAGACTTTCTGAACATGATTGTGCACACACGGGACGTCCTGAAGGACACGGTGGACATTTCTCTGGGACTGAAGGACAAGCACGAGCTCCTGTCTCTGATCATCCGCAGCCACGGCACGAGGCTGAGCAGACTGAAGAACGAATACATGAAGTTCTGAGAGAAAGTAGTTCCTACACGTCTCATTACagtacttttattattattattattattattattattattttcgtTATGGTGGAGTGTGTGACCATGAGGCAGAGGCAGGAGTTAAGCAATCTGAGCAGTCATATCAGGGATACAAACTACACTTAAAGGGCCAGTTCATCTAAATTAaatttataatattaaaatataaattcaaatataatacattttcgTGTTTAGCTCTAGAGCAGTGTTTTCCAACTTGGGTTTTCTTCCAAAGGGTCAAAAAGAAACCGTCTGAGGTCACAAGATGGTTAAGGGTTAGCTTGGTAAAAACTATTCTCTCATCTTTGCCgtttctttttgtaaaatactcaACAGTTCACCTTTTGATTGATGCTCAAAAGTATTCAAACTAAACGATCTGATCAGTTTTTTTAAGGGAAGTTGCTCACTGCTCACAGCTCATCAGTCCTACGTGATCCGTGAGGAGGTTGCAGGTAGCCTACAGTACACTTTGTTTCACTTTAAAGGGTCAGAGACAAAAACGTTTGGGATCCACTGCTCTAGAGGTATGTAGCCATGCACCTAGTTTGGGTTGAAATTGTCCAGGTTATGTGATAAATATCCAAAGCTGGATTACCAAACGGGCAAAGAAGGCAACTGCCCCAATGCCTGAGACTCCCTGAGAAACAAACAGTGGTCAATTCGTGGCAGAAATCTCTGAGGGATGAcataataattaattattattataattatttggcatataaaaccaaaactatcttTGTTGCTAGGAACTGCTGGTGGTAAAGTAAGAAAACGTgttgttttaaactttaaaaaaaaaaagtctgttggACTGTATCTGAcaccaacaattttttttaaatttataagACAATAAGGAGTGGGCAATATGGATAATATCCTCTTTCAGAGTAAATGCAATTTTATATGACGATATTGTCAAGCCAATTAAGAAATAGTTAAGGAATAAAATAACCAGAAagaaatgtctgtttttggCCGACCCAGCAAACTATATACCGAACAAATCAAAGTCCTTTATCATATTGATGCAAATAAAAATCCAATATTGCCATACAGTGGTCCTGCTCAGTGATTTGCCATGCACCCAGAGATATTAAAGAGCTACCGAGCTATAAACAGTATGGCATAATCTTTACACAAATATCACCTGACTGTGTGAATTGTCATATTGACCACTCCTAGAGACCCATGGTAATGGTCATTACAcaccatacaaacacacaacaaagtaaaaaatgtaTGGCAATAACGTTAGTTAACATCTGTCCGCCAATCAATGTGCCTCTTATGGCCATTTTTGGTAAGTGCATTGAATTTGACTGTACACAGTCacaggtttgtgtgtgcgtgttagtGTGGGTGTGCGTATGTGTAAAAACAACGGCTTCAAACATGAGTCGGCcaattaaaaaagtgaaaacagaAACTATCAGTTTTCATAACACTAGTACTGTAGTCAGTTTAAGGGTTTTCCAAAACCCATTCTGTCCTCTGTGACCAAAACAAACGGAGTGAGTAttggtataaaatatataaaaaaataattaaggaTTAAGTAGAATTTTGGACACATTGGACAGCTTATGTTTTAGTATCCATATTCACTGTAGTGAATGCTATGTGTTTGGTTTGATTTTTGACCCAAAAGTTGGATAAATGAGTTTTGGATAACTCTTCacatagggttagggttggggggTGGACCTTTTGTTGTCCAGATGAATGTTtttaagaatataaaaaaaatgtttacatattgacaCCTATGTTGTAATTTTTGCTTTATAGGCTTTGCACACTTCTTTTACTGTTCTGGTGCTAAAGTTTGTACCATGGTTTAAAAAGCAAGGCCTTTACTGTGCTGTTATGCACAGGCAGTATAATCTTGGAAAATGTACAGCGTATTGTTAGAAGTAAGTAAATACTGTGAGTGCCAATATCTTTATTACAAAATACCTTAATATGTATTCATTGTTTATATAAAGTTTTGAAATAGAGCTGCATATGTATCTAttcttgtttacctttttaAGATATGTGGTGAGATGTAATACATTGACAGATAAGACTGCAGGCAGCACTCATGGACTTCAATGTCAAAGACTAATCTGTGTGACAATATTCTTAACagattgtgtgttgtgtcttaAATAAAGCGTTTGTGTTTAAAGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36427 lncRNA upstream 18863 14683833 ~ 14684116 (+) True G27356
XR_005638843.1 lncRNA upstream 125276 14574197 ~ 14577703 (+) True LOC120556358
TU36395 lncRNA upstream 125729 14576443 ~ 14577250 (+) False LOC120556358
TU36387 lncRNA upstream 236299 14466478 ~ 14466680 (+) True G27320
TU36368 lncRNA upstream 478745 14223309 ~ 14224234 (+) True G27306
TU36433 lncRNA downstream 24583 14730817 ~ 14731646 (+) False G27358
TU36436 lncRNA downstream 24583 14730817 ~ 14731646 (+) True G27358
TU36425 lncRNA downstream 27681 14733915 ~ 14735176 (+) False bbox1
TU36528 lncRNA downstream 244641 14950875 ~ 14953193 (+) False kcna4
TU36530 lncRNA downstream 251266 14957500 ~ 14957867 (+) True G27432
XM_039795756.1 mRNA upstream 239686 14283159 ~ 14463293 (+) True luzp2
XM_039795637.1 mRNA upstream 608658 14092864 ~ 14094321 (+) True cdkn1ca
XM_039794847.1 mRNA upstream 647485 14048291 ~ 14055494 (+) False traf6
XM_039794848.1 mRNA upstream 647485 14048370 ~ 14055494 (+) False traf6
XM_039794849.1 mRNA upstream 647485 14048556 ~ 14055494 (+) True traf6
XM_039795300.1 mRNA downstream 2328 14708562 ~ 14734747 (+) True bbox1
XM_039794712.1 mRNA downstream 146051 14852285 ~ 14860024 (+) True LOC120555721
XM_039794713.1 mRNA downstream 146082 14852316 ~ 14864789 (+) False LOC120555721
XM_039795511.1 mRNA downstream 183156 14889390 ~ 14965062 (+) False kcna4
XM_039795510.1 mRNA downstream 183156 14889390 ~ 14953245 (+) True kcna4
TU36145 other upstream 1465160 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1592640 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2671251 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 4842979 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5098543 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 735243 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 768930 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 3018314 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3855661 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4781012 19487246 ~ 19487533 (+) True G28581

Expression Profile