RNA id: XM_039795302.1


Basic Information

Item Value
RNA id XM_039795302.1
length 5606
RNA type mRNA
GC content 0.54
exon number 38
gene id madd
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14740192 ~ 14804767 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTTCGCCAGGCTTGTGTGTGTCGCTTCCGTTAGGTCTCAGTATGCGGAACTCCCTGcacactgatgatgatgaagaggatgtTGTGAAGGCAGGTTGTAACTGACTGAGCTACCCGTTCATCGAGCTGAGAGGTGGACACACATTTTTTCGCATCATCTATTTATGCTGCGAACCAGTCAGTCACACTGAGTAGCTTCCCCCTTTTCAGCCGTCGTTTCCAATGCTATAACGTTACCGCCATCTAAAAGAAAGAAGGCTGAATTCAGACATACACCGCTGCCTCTCCCCCTGTGTGACCGTGGAGGACACCCACCACCCAGGCCGTCATCAGCAGCTGGTCTCGCAGCGAACGTTAGCGGCTAACCGGCTAATGTAAAGCAGGTTTGactctgtcattttttttaaccatcacAATGATAATCAAGGAGCTGTGTTTCAACTTTACACCTGAACTTTCCCAGTTGTGATGGAAAGGCAACACTGACACAAGAGAGAGCATAAATCCTGGATGCCGTGACGCACGGGACGTGTTCAATCCAagatggagaaaaagaaaatgtgcccTCGTCTTCTTGACTACTTGGTGGTAGTCGGAGCAAGGCAACCAAGTAGTGACAGTGTGGCCCAGACGCCACAGCTCCTCCGCCGCTACCCACTGGAGGACCACCACGACTTCCCGCTCCCACCAGACGTGGTCTTTTTCTGCCAACCAGAGGGCTGCCTGAGCATACGCCAGCGTAGGGTCAGCCTCCGCGACGACTCCTCGTTTGTGTTCACGCTGACGGACAAGGACTCCGGAATCACCCGCTACGGAATCTGCGTCAATTTCTACCGTTCTTTTCAGCGAGGGCATCATCGCGCTCGCGGGGACAAGAGCGGCCACACGGAGACGGCGGCACAGGCGGCGGAGACCGCCAGCGATGGGTCCGATGGCAGCAGCGGAGGCCCACCCTCCGTGTTATCGCCACCCAACAATGCCGAGTCCGCACCTCCGCCTGCCTCTGGCGAAGAGGGCGGGCAACCGGGTGCCGAGCTAAACGCCGGCAAGTCCCCACAGCAGAGACGAAGCGCTGCTAAGATGGCAGCCAGGAACCGCAACAGCACGCTGACCTCGCTGTGCATTGTGAGCCACTACCCCTTCTTCTCCACCTTTAGGGAATGCTTGTATATTCTCAAGAGGCTGGTGGACTGCTGCAGTCAGAGGCTTACTCAACGAGCTGGGCTCCCTCGCACCACCCAGAGGGACACCATGTGGCGGGTATTCACTGGGGCACTGTCGGTGGAGGAGAAAGGCAGCCAGCTGCTGGCCGACCTGCGGGAGATTGAATCCTGGGTGTACCGTTTGCTTCGTTCACCGGTACCAGTGGCTGGCCAGAGGCGTGTGGATGTGGAAGTCTTACCACATGAACTCAAACGGCCACTCACCTTTGCCCTGCCTGACAACTCGCGCTTCTCCATGGTCGACTTCCCCCTGCACCTGCCCTTGGAGCTGCTGGGCGTGGACGCCTGTCTTCAGGTGCTCAGCtgtgtcctactagagcacaaGgtcATTCTTCAGTCCAGAGATTACAATGCTTTGTCAATGAGCGTCATGGCCTTTGTGGCCATGATCTACCCTCTGGAGTACATGTTCCCTGTCATCCCCTTACTGCCAACATGCATGGCCTCTGCTGAACAGCTCCTTCTTGCCCCCACTCCCTACATTATAGGTGTACCAGCCAGTTTCTTCCTCTACAAAGCTGGTTTCAAAATGCCAGACGATCTCTGGCTCGTGGACCTTGACAGCAGCAAGGTTATAGCGCCCACCAATGCAGAGATTCTACCACCGCTTCCAGAGCCTGAAGCATGCGAGCTTAAGAAACATCTAAAACAGGCCTTGGCCAGCATGAGTTTGAACACCCAACCCATCCTGAACCTGGAGAAGTTCCAGGAAGGTCACGAGATGCCCCTGCTCCCTCCTGGACGAGATAAAGCCTCGCCGTCCTCCACAGAGTTCAACCCTCTAATTTACGGCAACGACGTTGATTCTGTGGATGTAGCCACCAGGGTCGCCATGGTACGGTTCTTCAACTCCCCAAATGTTCTCCAGGGGTTCCAGATGCACACTCGCACCTTGCGCCTCTTCCCCCGGCCTGTGGTGGCTTTTCAGTGTACTTCTTTTTTGGCATCTCGGCCTCGACGCTCTTGCTTTGCAGATAAACTTTTCCATGATTATCAGGTATTTTATAAACCGTTTACGCTGCGTGCCTCTGTTTCAGATGTCTTTGACCCCTCCTTAATCGGAGACAAGCCCAAGTGGTATGCTCACCAGCTACAGCCAGTGGTCTACCGAGTGTATGATGGAAGCTCCCAGCTGGTAGAAGCTATGGCTGGTCCCTTGGAGGATGAGGGCAATGAGTCTGACCCCACAGACAGTGGCAGTGACAGCGAGGCATACGATGACTCCAGCTCGTCCTATTCCTCACTTGGAGATCTTGTGAGTGAGATGATCCAAGGTGACATCCAGGGAGACACAccaaGCTTGGACCCGCCTACCCATGCTGCACTGGGAGACGCTAGTGAGGTTGAGTTTCAAGAGTTCCATGACTTCAGGGAAAGTCGGGGCTCCGATGGTCCACCGAATGGGGACGGACCTGCCGAACCGGCAGATGGACAACCTCTTCGCTCAAGCTCCAGCACAACTGCAAGCTCAAGTCCCAGCACGGTCATCCAGGGAGTCAACCAAGAGCAGGGGGAAGCACTTGACCTCAACGCATCGGCAGGGGCTGCTTTACAGAATCCTGTCTCCGCGTTGGGCAGTCAGCCGTTCCTCAGACCTCCAGCTGATGCTGGCCTGGCCGACCAAGCCAACAAAAAGCAAGAGTATGACAACCCGTACTTTGAGCCTCAGTATGGCTTTCCCTCAGAGGATGACCCTGATGCAGAAGAGCACGTGGAGTCATACACCCCTCGATTCAACCAGAACCTCAATGGCAACAAGGCACAGCGTCCTTTACGTCCCAGTAGCCTGAGGCTCCCAGGAGAGTCTGATGGGGAGGGAGACTCTCGCAACAGCTCGCCAAACTCCACCATTTCCAACAGCAGCAATGATGGATTTGGAGGACTCATGTCCTTTGCCAGCAATCTTTACAAGAACCACGGCACCAGTTTCAGTCTGTCAAATCTGGCTCTTCCCAACAAGGCAGCGAGGGAGAAAACGCCTTTCCCCAGTCTAAAAGAATATTTCAATTTTGATGTTGAGGAGGAAATGGAGCAAGCAGTATTTGGGCTAAATTCTCTAATGGAGATAATTACAGAGGCCGGCCCGGGGAGCGGAGAAGGCGCTCGTGCACCTCGAGCACTTGTGGACCAGAAGTCTTCAGTAATCAAGCACAGTCCAACAGTGAAGAGAGAATCGCCCTCCCCTCAGGGCCGAGTCAACAACACAAGCGAGAACCAGCAGTTCTTGAAGGAAGTGGTGCAGAGTGTTCTGGATGGTCAGGGAGTCGGCTGGCTCAACATGAAAAAAGTGCGCCGCCTGTTGGAGAACGAGCAGCTTCGGGTGTTTGTGCTGAGTAAGCTGAACCGAGCCATCCAGTCGGAGGAAGACGCCAGACAGGAGATCATACGTGATGTGGAGGTGAGCAGAAAGGTATACAAAGGCATGCTGGATATCTTGAAGTGCACAGTTTCCAGTCTGGAGCATTCTTACACTAACGCAGGCCTCGGAGGAATGGCCAGTGTCTTCAGCTTACTGGAAATAGCACGCACACATTATCAAACCAAAGACCCAGAAAAACGCAAGCGAAGCCCCACAGACAGTGCTGGCAGCCCCGGGAGTAAAGAGAGTCCTTCTGGTCGTATGGAGACTGCCAGACCTCAGGGCCTTCTGAATGTTCCTCACCTGCAGCTGCCGCACCACACAACGGGCAAAGGAGCCCGCCATTTTGATACCCGAAGTCTGAACGAGGAAAACTTTATTGCCTCGATTGAATTGTGGAGCAAGCACCAGGATAAGCAAAAAGCTATGGAAAAACCACAGAGGTCTGATGGAGCAAAGCAGCAGCGCCCCCAAGTGACTGATGCAGAGGAGAAGAAATCCCAGATCAGTGCTGACAGTGGCCTCAGTGTCACATCTGGATCTCAGAAGAGTGACACAGAGTCTGGAAGGAGTTCAGAGCCACCGATCCTGACAAGAAGCACCAGCCAGGACTCCGAGGCCAGCACAGTGATAAGCAACAGCTCTGGAGAGACTCTGGGAGCTGACAGCGACCTGAGCAGCACAGCAGACGGCTTCGGTGGCAGAACTGCTGCCCATTTAGCTCAGTCCAGAGGGACTCTTTCTGACAGCGAGATTGAAACCAATCCAGCCACCAGCACTGTGTTTGGAAAGACCCACACCCTGAAACAAACCGCAAAAGATCAAGGACCTACTATGGCGAAGGGGCCGCCTGCGCAGCCCATGGAGGACGTCAGCATGAGGATTTACCTTTGTGAAGGCCTGCTGGGCCGCGATAAGAGCTCCGTTTGGGATCAACTAGAGGATGCTGCCATGGAAACCTTTTCTCTAAGTAAGGAGCGCTCCACTCTGTGGGACCAGATGCAGTTCTGGGAGGACGCGTACCTCGATGCTGTGATGTTGGAGCGTGAGGGCATGGGCATGGACCAGGGACCTCAGGAGATGATCGAAAGATACTTGTCACTAGGGGATCATGACCGCAAGCGTCTGGAGGATGATGAAGACAGACTCCTGGCCACCCTGCTGCACAACATGATTGCATACATGCTAATGCTGAAAttgAACAAAAATGACATCAAGAAGAAAGTGAGGCGTTTGATGGGAAAGTCCCACATTGGCCTCACATACAGCCAAGAGATCAATGAGATACTGGACAAACTCGCCAACATGaacggCCGTGAGTTGGCCATCAGGCCCAGTGGAAGCCGTCACATCAAGAAGCAAACGTTTGTTGTACATGCTGGCACTGATACCACAGGAGACATCTTTTTCATGGAGGTTTGCGATGACTGTATAGTCCTGCGCAGCAACATCGGCACAGTTTACGAGCGCTGGTGGTACGAGAAGCTCATCAACATGACTTACTGCCCCAAGACCAAGGTGCTGTGTCTCTGGAGACGCAACGGCCAAGAGACGCAGCTCAACAAGTTCTTTACCAAAAAGTGTCGTGAACTCTACTACTGTGTTAAAGACAGTATGGAAAGAGCTGCAGCAAGACAGCAAAGCATTAAACCAGGTCCGGAGCTGGGCGGAGAGTTTCCTGTCCAGGACATGAAAACTGGCGAAGGTGGACTGCTGCAGGTCACACTGGAAGGAATCAACCTTAAATTCATGCACAGCCAGGAGCGGAAGgtTTTCATAGAGCTGAGTCACATTAAAAAGTGCAATACAGTGAAGGGAGTCTTTGTCCTGGAGGAATTTGTTCCTGAAACTAAAGAAGTGGTGATCCACAAGTACAAGACCCCCATGGCACATCAGATCTGTTACTCGGTCCTCTGCCTTTTCTCCTACATGGCGGCAGTGAAGGGGAAGGAGGCGGAAGGAAAACCCAAGATTCTGTCACCCGAGACCCCTTCCTAGCTAGTCTACGCCCCGTGCACCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638783.1 lncRNA downstream 31530 14692209 ~ 14708662 (-) True LOC120556013
TU36474 lncRNA downstream 33976 14703059 ~ 14706216 (-) True G27395
TU36413 lncRNA downstream 126863 14613115 ~ 14613329 (-) True G27344
TU36407 lncRNA downstream 160185 14578811 ~ 14580007 (-) False LOC120556476
TU36403 lncRNA downstream 162397 14573615 ~ 14577795 (-) False LOC120556357
TU36523 lncRNA upstream 49958 14854725 ~ 14862463 (-) True G27425
TU36531 lncRNA upstream 85010 14889777 ~ 14890063 (-) True G27433
TU36536 lncRNA upstream 144811 14949578 ~ 14949985 (-) True G27438
TU36538 lncRNA upstream 147918 14952685 ~ 14953344 (-) True G27440
TU36539 lncRNA upstream 148771 14953538 ~ 14953891 (-) True G27441
XM_039796067.1 mRNA downstream 86008 14638986 ~ 14654184 (-) True muc15
XM_039796120.1 mRNA downstream 160181 14578027 ~ 14580011 (-) True LOC120556476
XM_039794112.1 mRNA downstream 489860 14225777 ~ 14250332 (-) True lingo1b
XM_039794096.1 mRNA downstream 586744 14101129 ~ 14153448 (-) False kcnq1.1
XM_039794711.1 mRNA upstream 6678 14811445 ~ 14828395 (-) False nr1h3
XM_039794709.1 mRNA upstream 6678 14811445 ~ 14828394 (-) False nr1h3
XM_039794710.1 mRNA upstream 6678 14811445 ~ 14828394 (-) True nr1h3
XM_039795469.1 mRNA upstream 73255 14878022 ~ 14881139 (-) True LOC120556084
XM_039795631.1 mRNA upstream 212797 15017564 ~ 15043882 (-) True LOC120556194
TU36388 other downstream 269847 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 1450928 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 1644426 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 2435368 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 2778420 11960701 ~ 11961772 (-) True G26891
TU36517 other upstream 37946 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 835002 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2703356 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2705183 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2705361 17510128 ~ 17513168 (-) True G27925

Expression Profile