Item | Value |
---|---|
RNA id | TCONS_00073563 |
length | 809 |
lncRNA type | retained_intron |
GC content | 0.45 |
exon number | 3 |
gene id | XLOC_037388 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007120.7 |
NCBI id | CM002893.2 |
chromosome length | 56459846 |
location | 43797902 ~ 43883267 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0070534 | protein K63-linked ubiquitination | biological_process |
GO:0000209 | protein polyubiquitination | biological_process |
GO:0070936 | protein K48-linked ubiquitination | biological_process |
GO:0070979 | protein K11-linked ubiquitination | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0016740 | transferase activity | molecular_function |
GO:0005524 | ATP binding | molecular_function |
GO:0000166 | nucleotide binding | molecular_function |
GO:0061631 | ubiquitin conjugating enzyme activity | molecular_function |
id | description |
---|---|
ZDB-GENE-030131-408 | Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K11-linked ubiquitination; protein K48-linked ubiquitination; and protein K63-linked ubiquitination. Predicted to be active in nucleus. Orthologous to human UBE2E3 (ubiquitin conjugating enzyme E2 E3). |
ensembl_id | ENSDART00000136628 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00075186 | lncRNA | upstream | 892521 | 42732199 ~ 42905622 (+) | False | XLOC_037385 |
TCONS_00075188 | lncRNA | upstream | 892521 | 42732992 ~ 42905622 (+) | False | XLOC_037385 |
TCONS_00075187 | lncRNA | upstream | 896606 | 42732991 ~ 42901537 (+) | False | XLOC_037385 |
TCONS_00075189 | lncRNA | upstream | 896606 | 42894843 ~ 42901537 (+) | True | XLOC_037385 |
TCONS_00075181 | lncRNA | upstream | 1297859 | 42348958 ~ 42500284 (+) | False | XLOC_037383 |
TCONS_00073574 | lncRNA | downstream | 629508 | 44430972 ~ 44469429 (+) | False | XLOC_037393 |
TCONS_00075190 | lncRNA | downstream | 653679 | 44455143 ~ 44456108 (+) | True | XLOC_037394 |
TCONS_00073584 | lncRNA | downstream | 1194183 | 44995647 ~ 44998575 (+) | False | XLOC_037398 |
TCONS_00075191 | lncRNA | downstream | 1238301 | 45039765 ~ 45044991 (+) | True | XLOC_037399 |
TCONS_00075192 | lncRNA | downstream | 1311032 | 45112496 ~ 45116841 (+) | False | XLOC_037401 |
TCONS_00073556 | mRNA | upstream | 1147520 | 42546504 ~ 42650623 (+) | False | XLOC_037384 |
TCONS_00073557 | mRNA | upstream | 1147520 | 42606681 ~ 42650623 (+) | False | XLOC_037384 |
TCONS_00073559 | mRNA | upstream | 1147964 | 42607146 ~ 42650179 (+) | True | XLOC_037384 |
TCONS_00073558 | mRNA | upstream | 1148545 | 42607138 ~ 42649598 (+) | False | XLOC_037384 |
TCONS_00073555 | mRNA | upstream | 1527183 | 42270043 ~ 42270960 (+) | True | XLOC_037382 |
TCONS_00073567 | mRNA | downstream | 233326 | 44034790 ~ 44088067 (+) | False | XLOC_037390 |
TCONS_00073568 | mRNA | downstream | 233333 | 44034797 ~ 44088067 (+) | False | XLOC_037390 |
TCONS_00073569 | mRNA | downstream | 233526 | 44034990 ~ 44080500 (+) | True | XLOC_037390 |
TCONS_00073570 | mRNA | downstream | 503516 | 44304980 ~ 44369857 (+) | True | XLOC_037391 |
TCONS_00073571 | mRNA | downstream | 589790 | 44391254 ~ 44420380 (+) | False | XLOC_037392 |
TCONS_00073561 | other | upstream | 22778 | 43775251 ~ 43775365 (+) | True | XLOC_037387 |
TCONS_00073560 | other | upstream | 466632 | 43331395 ~ 43331511 (+) | True | XLOC_037386 |
TCONS_00073552 | other | upstream | 1672759 | 42099737 ~ 42125384 (+) | True | XLOC_037378 |
TCONS_00073546 | other | upstream | 1702966 | 42040557 ~ 42095177 (+) | False | XLOC_037378 |
TCONS_00073545 | other | upstream | 1759824 | 41990086 ~ 42038319 (+) | True | XLOC_037377 |
TCONS_00073566 | other | downstream | 54031 | 43855495 ~ 43855610 (+) | True | XLOC_037389 |
TCONS_00073582 | other | downstream | 1130711 | 44932175 ~ 44932293 (+) | True | XLOC_037397 |
TCONS_00073585 | other | downstream | 1194805 | 44996269 ~ 44997423 (+) | True | XLOC_037398 |
TCONS_00073586 | other | downstream | 1262691 | 45064155 ~ 45064269 (+) | True | XLOC_037400 |
TCONS_00073589 | other | downstream | 1425637 | 45227101 ~ 45334105 (+) | False | XLOC_037402 |