RNA id: TCONS_00073563



Basic Information


Item Value
RNA id TCONS_00073563
length 809
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_037388
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 43797902 ~ 43883267 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTCCAATGTTCACAGCTCGGCCGGAGCCCGTCGTCTTCCCGGCTCCATTTCAACTGGATTTTTAACACTCCTAACCACCCCAGTTCAGGACAGGACCGCGTCTAAGGTGGAAAATGTCCAGTGAAAGACAACGGTCAGATGATGAAAGTCCCAGCACCAGCAGCGGTAGTTCTGATGCGGATCAGAGAGATCTCCCGGTGCCAGAACCAGAGGAACAAGAGGAGCGAAAACAACCAACGCCTCCACAACAGCAGAAAAAATCCACCAAACTGTCCAGCAAAACAACAGCCAAATTATCCTCCAGCGCAAAGAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGGTATGTTATTTAACGCATGCTGTCATATTTGATCTGCTTTGAGAAGGAATCGCTATAGGAAGGAATTGACTTTTTAGCTCCAACTGTTAAAGTTTTTAagcctcttttttttaaaaaactaatggTCTCATTCTTGATCAATGTGGCATTTTGCTCCTCTGCTTCAAAGAGTTGGGaaggatgagttttttttttctccctcagaGCATTATTGTTACTGATGTTCCTGTGGTCTTGGCGCTgttgtgtttttaataatatgGCAGATGCTGCTCCGAAGCATATGGCTTTGATTTCACATCCTCATGCTGAACTTACTGCTGAACCCCCCCATCTGCTTTAATGAGCTGACCTAGAGATGCCAGAACAAGACGAGGGAGCTTTTAAAATTCCCTCTGTAGCGCTTGTGTTATTTTGCTTTGAAGGACGGCCGTTTTTGGGTTGT

Function


GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-408 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K11-linked ubiquitination; protein K48-linked ubiquitination; and protein K63-linked ubiquitination. Predicted to be active in nucleus. Orthologous to human UBE2E3 (ubiquitin conjugating enzyme E2 E3).

Ensembl:

ensembl_id ENSDART00000136628

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00075186 lncRNA upstream 892521 42732199 ~ 42905622 (+) False XLOC_037385
TCONS_00075188 lncRNA upstream 892521 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00075187 lncRNA upstream 896606 42732991 ~ 42901537 (+) False XLOC_037385
TCONS_00075189 lncRNA upstream 896606 42894843 ~ 42901537 (+) True XLOC_037385
TCONS_00075181 lncRNA upstream 1297859 42348958 ~ 42500284 (+) False XLOC_037383
TCONS_00073574 lncRNA downstream 629508 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA downstream 653679 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00073584 lncRNA downstream 1194183 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00075191 lncRNA downstream 1238301 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00075192 lncRNA downstream 1311032 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00073556 mRNA upstream 1147520 42546504 ~ 42650623 (+) False XLOC_037384
TCONS_00073557 mRNA upstream 1147520 42606681 ~ 42650623 (+) False XLOC_037384
TCONS_00073559 mRNA upstream 1147964 42607146 ~ 42650179 (+) True XLOC_037384
TCONS_00073558 mRNA upstream 1148545 42607138 ~ 42649598 (+) False XLOC_037384
TCONS_00073555 mRNA upstream 1527183 42270043 ~ 42270960 (+) True XLOC_037382
TCONS_00073567 mRNA downstream 233326 44034790 ~ 44088067 (+) False XLOC_037390
TCONS_00073568 mRNA downstream 233333 44034797 ~ 44088067 (+) False XLOC_037390
TCONS_00073569 mRNA downstream 233526 44034990 ~ 44080500 (+) True XLOC_037390
TCONS_00073570 mRNA downstream 503516 44304980 ~ 44369857 (+) True XLOC_037391
TCONS_00073571 mRNA downstream 589790 44391254 ~ 44420380 (+) False XLOC_037392
TCONS_00073561 other upstream 22778 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073560 other upstream 466632 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073552 other upstream 1672759 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 1702966 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073545 other upstream 1759824 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073566 other downstream 54031 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073582 other downstream 1130711 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 1194805 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073586 other downstream 1262691 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073589 other downstream 1425637 45227101 ~ 45334105 (+) False XLOC_037402

Expression Profile


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