RNA id: TCONS_00073565


Basic Information

Item Value
RNA id TCONS_00073565
length 682
lncRNA type retained_intron
GC content 0.54
exon number 4
gene id XLOC_037388
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 43797902 ~ 43883267 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGCAGTAAACGCAGCAGAGGTAGAGGGCAGTGTAATTCCCTGGCTGCTTGCAATTCTTACagctttctctccctctcttctcCTCTCGCAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGtGCGGGACCCAAAGGTGACAACATCTATGAGTGGAGATCCACCATCCTGGGTCCACCAGGTTCAGTCTATGAGGGCGGCGTCTTCTTTCTGGACATCACCTTCTCCTCGGATTACCCCTTTAAGCCACCAAAGGTCACGTTTCGTACGAGGATCTATCACTGCAACATCAACAGTCAGGGTGTGATCTGCCTGGACATCCTGAAGGATAACTGGAGCCCGGCTCTGACCATCTCCAAGGTCCTGCTTTCCATCTGTTCTCTGCTGACAGACTGCAATCCAGCGGATCCTCTGGTGGGAAGCATAGCTACTCAGTACCTGACCAACAGAGCAGAGCATGACAGAATAGCTCGACAGTGGACCAAGAGATACGCCACATAGACGGCAGGTCACCGACACCTCCAACCTCTGGTCTGCCCTTCCTCCTCTTCCCAAATCCCCTTCGTCCATCCCTCGCTCCGCACACTCTTCTCTGCCGCCACCGCCCCCAGTTCCCTTCCACCCGCAGGAGTGTAAAGATCCAGGAGAGGCAACTTTACA

Function

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-408 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K11-linked ubiquitination; protein K48-linked ubiquitination; and protein K63-linked ubiquitination. Predicted to be active in nucleus. Orthologous to human UBE2E3 (ubiquitin conjugating enzyme E2 E3).

Ensembl:

ensembl_id ENSDART00000138549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075186 lncRNA upstream 895254 42732199 ~ 42905622 (+) False XLOC_037385
TCONS_00075188 lncRNA upstream 895254 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00075187 lncRNA upstream 899339 42732991 ~ 42901537 (+) False XLOC_037385
TCONS_00075189 lncRNA upstream 899339 42894843 ~ 42901537 (+) True XLOC_037385
TCONS_00075184 lncRNA upstream 1300592 42491425 ~ 42500284 (+) False XLOC_037383
TCONS_00073574 lncRNA downstream 551180 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA downstream 575351 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00073584 lncRNA downstream 1115855 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00075191 lncRNA downstream 1159973 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00075192 lncRNA downstream 1232704 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00073556 mRNA upstream 1150253 42546504 ~ 42650623 (+) False XLOC_037384
TCONS_00073557 mRNA upstream 1150253 42606681 ~ 42650623 (+) False XLOC_037384
TCONS_00073559 mRNA upstream 1150697 42607146 ~ 42650179 (+) True XLOC_037384
TCONS_00073558 mRNA upstream 1151278 42607138 ~ 42649598 (+) False XLOC_037384
TCONS_00073555 mRNA upstream 1529916 42270043 ~ 42270960 (+) True XLOC_037382
TCONS_00073567 mRNA downstream 154998 44034790 ~ 44088067 (+) False XLOC_037390
TCONS_00073568 mRNA downstream 155005 44034797 ~ 44088067 (+) False XLOC_037390
TCONS_00073569 mRNA downstream 155198 44034990 ~ 44080500 (+) True XLOC_037390
TCONS_00073570 mRNA downstream 425188 44304980 ~ 44369857 (+) True XLOC_037391
TCONS_00073571 mRNA downstream 511462 44391254 ~ 44420380 (+) False XLOC_037392
TCONS_00073561 other upstream 25511 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073560 other upstream 469365 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073552 other upstream 1675492 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 1705699 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073545 other upstream 1762557 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073582 other downstream 1052383 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 1116477 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073586 other downstream 1184363 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073589 other downstream 1347309 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073592 other downstream 1660685 45540477 ~ 45540593 (+) True XLOC_037402

Expression Profile

//