RNA id: TCONS_00073567


Basic Information

Item Value
RNA id TCONS_00073567
length 3388
RNA type mRNA
GC content 0.47
exon number 28
gene id XLOC_037390
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 44034790 ~ 44088067 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcttcagTAGTTTCCAGCGATGACGCGCTTTAACGCTCTGCCCCAGAGAGTGTCCGGCGCTCAGAGCGTGTTCCCGCCCCTGCGGCGCGCCCACTCCCACTTCAAAGGCTTCCCTTCACTCTGAGCGCTGTGACGTCACTGAAACACGAGGCGCGCTCCAGCAGAAGAGGTGCGGGAGCGCAACAGGCGAGCGCACATCTCGAGTTCACAAGCACAATGACAACTTCCTGATACATCAACTAAAAGTTAAGCCGAACTCTTTGCACTTTTGTTTGAAGGCAGCGCTGGCTCTCTGCTGTTATCTGCGTGTGGTGCTCTGACTGATGACGAGATGATTTCATCACAACTCACTGGAGATTTGCTGAAGTGGACATCTGGATTTGGGATCCTGTGGTACCTGTTGATTCTGTGCGATTGCTACAATCTGGATGTGGAGCATCCTTTAGTTTTTAACGGACCAAACGGATCATTATTCGGATACTCTGTTCTGCTTCACCAGCATAATGAGAACACATGGTTGTTAGTTGGAGCGCCTGTGGCCAATTCCAGCTTTTATCCTAATATCAAAAGTCCTGGAGCCATCTACAACTGCAGTATGTTGAACAGCCAGTGTGAGCAGCTCCCTGTTGGAGGTGTGCAGCGCTGTGGAAGACACTGTTTGGCAGAGAATGATAACCAGTGGCTGGGTGTGAGTTTGTCCCGGCAGGCCTCAAAAGGCCATGTTTTGgcatgtggacatcgATGGAAGAATGTTTTCTACTCCAGTAAAGACAATCAGAACAAGCTGCCGCATGGTGTTTGCTTCAGATTCAGCCCAGATTTGAAACACGCCAGTCATATTATCCCCTGCTATAAAGATCATCAAAGAAGGTTTGGTGAGGGTTATGGGTCATGCCAAGCAGGAATATCAAACTCATTCACAGAGGATTTAATGGTTATGGGAGCTCCTGGTACCTCATACTGGACTGGATCTGTTCTGGTCGTCAACACAACAAGCAACATATCAGCTGCTTATGTGGATGATGACAGTGATGTTCTCTATGGCAGTTATTTAGGTTACTCTGTTAGTGCTGGACACTTTCTAGATCCTCAAAGCACTGAGATAGTCGGTGGTGCTCCTCAGCATGAACAGACTGGTAAAGCCTACATATTTAGGATTGAGGGCAACACTTTGAAAATTGTTAACAAAACCAAGGGCAAGACGCTTGGCTCTTATTATGGGGCGAGTGTTTGTGCTGTCGACCTGAACGCAGATGGACTGTCTGATCTGTTGGTTGGAGCGCCAATGTTCAGCTCAGTGCGGGAAGAGGGACGCGTGTATGTTTACATCAACCAGGGAGAGGCTGAACTGAAGGAGGCTGACTTTGAGTTAGTCGGCAGTGACTCTTATGCCGCACGATTTGGAGAAACCATCATAAACCTCGGTGATATTGATGATGATGGATATCCAGATGTGGCCATCGGAGCCCCTCAAGAGGACGATCTGCGTGGTGCTATATATATCTACAATGGCAGAAGGAGTGGCATTGCACGGAGTTTCTCTCAAAGAATAACAGGCTCATTGTTGGGAAACAACTTCAGGATGTTTGGTCAATCAGTGTCTGGAGGAGTGGATATTGATAGCAACAATTACCCAGATGTTGCAGTGGGAGCTTTCCTGTCAGACTCAGCTGTGGTGTTCAGGACTCGTCCAGTGGTGAAGGTGGATGCTGTTATGTTGTTGCCTGAGAGCTTGAATCGTTCTGTAGCCCAGTGCACTGAAAACGGCCAGCCTGCTGTCTGCATCAAAGTCAGGGTGTGCTTTAGGGTCAGAGGAAAACAAATCCCCGGAAACATAGAGCTGAAGTACAACCTTACAGCTGATGTTCACCACAAAGAAGGCTTCCCTTCTCGATTTTATTTCAGTGGAAACGGAACATCTAACGTAACAGCAGGCAGAGTAAAGGCCAAGCATGAGCAGCTCACCTGCGTGTTTCACCAGGCCTTCATGAAGAAAGATGTTCGTGATATCTTCACACCCATTCATTTTGAGGTCAAATATGAACTTGGAGAGCATCGTGTGGTGCAGAGAGACTTGGGTGATTTGCCTGCCCTTAAACCCATTTTACAGCAGAAGGATGAACTGGACAATGTCATCAAAAACAAGACCATCTTTGCTAGATACTGCTCCTGGGAAAACTGCTCAACCAACCTACAGGTTTCTGCTCGTTTGGTTTTACCACAGTCCTACAATAAAATGCCATATTTTGCTCTAGGTAATGGCAAAAGCATCATGTTAAACACCACACTGCTCAACACTGGAGATGATGCTTTTCTCCCCAAACTTCACTTAAGATTCCCCAGCAATCTGCATTTCATCAAAGTGCTGGAGGAGGACAAACTCGTCAGCTGTGAAATTGTAGAAGAGAATAAACTGGCAATTGGACTGGACTGCAGTGTTGGGAATTTATACATGCCTCCTTTCTCAAAGCTCAACATCACCTTTTTACTCGATGTGATGCAGAACAGCAGTGCGGGAGACCTTACTGTTAACATTAACGCTACGAGtgagaaCTTTGAGAACGCAGATCTTCAGCATGACAACGTGGCTGCTCTTACATTGCCTTTGAGATACGCAGTTGATATGAATGTTCACGGATTTGTCTCTCCGAATTTATTTATCATTGGAGAAGAGGAGTCTGTGCCGGTCGACTGCTATCCCGAGAAGTTCAATTATACGTACAAGGTGATGAATATTGGTCCTAGTAAAGCTCGTGATGCGAGAGTGAAGATCAGCTTGCCTCTGATGCTGGTGCTGTACAAACACCAGTTAATCAGGATTACAGATATACagTCAACTCTTGGCCATTGCTTCCAGAGGAACAATACTATTCACATCATTGATGACTGTGATGTTCCGGAAGCGTCTGTCATTCAGGAACTTGTGTTCTTTTTCTCCCCAAAAAGCAAACGCATAATGTTCTGTGGTCCTGAAGATCAGACCTGTAGGACTGTGGAATGCCGCTTCGGGGATCTGGAGGCTGGAAAGGAGGTGACCATCAACATGGAGGTGGAGCTCAATCCCAGGGTTCTCCAGATGAGTCCGGGCAGACACGCTGTCATGATGATTCATGGATCCATTGACCTTATTTCACCAGTGAGGGATGCAAACACCTTCTTACTACAGGATGACGTTTCTGCTAGAGTGATGGTGGAGGCTTTGTACACCCATAATCCTGGGCCAGTTGTGCGCATATTTATTATAGTATCTAGTCTGATCGTTGGACTGATCATTTTTGGACTGCTTGTTCTTACTTTATGGAAGCTTGGATTCTTCAAACGGACATTGAAGGAGAAGTTTCGACGGGACAGTTGGGACTATGTGCCCAAGCATGAAAGCGTATCATAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04514 Cell adhesion molecules
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko04640 Hematopoietic cell lineage
ko04670 Leukocyte transendothelial migration
ko04672 Intestinal immune network for IgA production
ko05165 Human papillomavirus infection
ko05135 Yersinia infection
ko05140 Leishmaniasis
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04147 Exosome
ko04515 Cell adhesion molecules
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-110411-108 Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cerebellum; intermediate cell mass of mesoderm; mid cerebral vein; notochord; and trunk. Human ortholog(s) of this gene implicated in autism spectrum disorder and pancreatic cancer. Orthologous to human ITGA4 (integrin subunit alpha 4).

Ensembl:

ensembl_id ENSDART00000166110

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073565 lncRNA upstream 154998 43800876 ~ 43879792 (+) True XLOC_037388
TCONS_00073563 lncRNA upstream 233326 43798143 ~ 43801464 (+) False XLOC_037388
TCONS_00075186 lncRNA upstream 1129168 42732199 ~ 42905622 (+) False XLOC_037385
TCONS_00075188 lncRNA upstream 1129168 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00075187 lncRNA upstream 1133253 42732991 ~ 42901537 (+) False XLOC_037385
TCONS_00073574 lncRNA downstream 342905 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA downstream 367076 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00073584 lncRNA downstream 907580 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00075191 lncRNA downstream 951698 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00075192 lncRNA downstream 1024429 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00073564 mRNA upstream 151523 43799829 ~ 43883267 (+) False XLOC_037388
TCONS_00073562 mRNA upstream 154464 43797902 ~ 43880326 (+) False XLOC_037388
TCONS_00073556 mRNA upstream 1384167 42546504 ~ 42650623 (+) False XLOC_037384
TCONS_00073557 mRNA upstream 1384167 42606681 ~ 42650623 (+) False XLOC_037384
TCONS_00073559 mRNA upstream 1384611 42607146 ~ 42650179 (+) True XLOC_037384
TCONS_00073570 mRNA downstream 216913 44304980 ~ 44369857 (+) True XLOC_037391
TCONS_00073571 mRNA downstream 303187 44391254 ~ 44420380 (+) False XLOC_037392
TCONS_00073572 mRNA downstream 309084 44397151 ~ 44404160 (+) True XLOC_037392
TCONS_00073573 mRNA downstream 342638 44430705 ~ 44487210 (+) False XLOC_037393
TCONS_00073575 mRNA downstream 342907 44430974 ~ 44486087 (+) False XLOC_037393
TCONS_00073566 other upstream 179180 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073561 other upstream 259425 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073560 other upstream 703279 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073552 other upstream 1909406 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 1939613 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073582 other downstream 844108 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 908202 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073586 other downstream 976088 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073589 other downstream 1139034 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073592 other downstream 1452410 45540477 ~ 45540593 (+) True XLOC_037402

Expression Profile

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