RNA id: XM_039795359.1


Basic Information

Item Value
RNA id XM_039795359.1
length 4298
RNA type mRNA
GC content 0.51
exon number 29
gene id lmo7b
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22189896 ~ 22227106 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGTCAGTGATGGAAAGTCGGTGGCAGAAGCGCGGGGTGTCCGGTAATCAATTAGCGGAGAACTTTCACCGGTGAGCAGCCACACACAGCACAAGAGTTGGGCATTTTGCTTGTTTGGAAGATTAACGATGGAGTGGCGCCAGCAGACCAGTGTCAGCTGTGCAGACGCGTTCAACGAGGCTCAACGCTGGATTGAGGAAGTGACTGGAAAATTGTTTGGTTGCAACGATTTCCGTGCTGCCTTAGAGAATGGAGTCCTGCTGTGCGActtgATCAACCAGTTGAAACCTGGCATCATTAAGAGAGTTAACAGGCTTTCTACTCCCATCGCGGGCCTGGATAATGTGAACGTATTCCTGAAAGCCTGTGGGAAACTGGGACTGAATGTGTCTCAGCTGTTTCATCCAGGAGACCTGCAGGACCTGTCCTCTCGTGCAACTGTCAGgcGAGATGAAAGCAACAGAAGACTCAAAAATGTTCTCATCACAATCTACTGGTTGGGTCGCAAGGCTCACCTTGATGCATTCTACAGTGGTCCTCAGCTGAACTTCAAGGCCTTTGAAGGGCTGTTAGGGTTGGCGTTGTCCAAGGCTCTAGATGAGGGCAGTAATGTGAAAGAGTGCTGGGACCCAGAGAGGGAGGAATGTCAGCGCATCAGACCGAGCTATAAGATGGCGAACTCTGCCGACGGCATTGACTTCCTGTACTCCCGTGGTGTCCTCCCAAACAATGAAAGTTGTGGAAGTGACGCGGAAGCTGAGCAGGTGTTCAAGATGGAGCCCACACAGCCTTCAACCCAACAAAACAAGGCTTATATCCCACCGCCACTCCTACGGAGGAAACAAGGACGGGAAGAGAATGAAAGGGGCTGCACTAGTCCACTCTCCAGGAGCAAATCACTCAGTGATATCCCGATGGTATACCCTGTGCGTAAAGTTCCTGATGTGAACACCATCTACGATGTGGACCAGGACAGTGAAGCTCAGTGGCACGATGACTTGTCAAAGTGGAAGAATCGTCGCAGGAGCAGCAAGTCTGACCTCCGCAGGAAGTCGCAGGACCGAGAACATGTCATTAACCAGATGGCCAATGGAGCGCTGGCTAAATTTGAGAAGAACGAAGCACAAGGCGGACTGCTAAAGAGAGACCAGCAGTTACCACGCAGGAATTACCCTGCCCCTCGTCCTTACTCCACCTCTCCTTCAGCAAAATCATTGAGCTCTGATCTCCGGCCACGTACTCGGGCTTTGCTGGCCCGCAGCTACACCACGGAGGCACCTTTCAGCCCCACGGCTCCACGTAGCCCCCACAAGTCAGCCTACACTCAGggatCATCAGTTGGAGCCATGCCTGCCTCTGATGGGATTGTCCTGGGAGAGGAGACCCACTTTGCCTCCTTGGCTTCAGATGGAACAGGAGTTACCACCCCTTCTCTGGACTGCCCTTTCAGCTCCCAGACCCAAGTCAAAGTGCAGGGCAGCCCAGCTCCTTTGCAGCCCAGGGATCTTACTGAATCCATGTCGAGTCACAAGGAACTTCCGTTCTGCCTTGATCCAAAAGTTCCCACTTTCTGTCCTGGTGCTGTTAACCAGGCAGGAGTTGATGCTCTGGAGGACTTGCCCCACCAGAACTACAAGTCCCAGGAAGAGAGCCAGAAGACATCTTGGGAACCAGCTGTGGAGCAAGGCAGTGTCAAGCAGGGGGTCAACAAGTACTTGTTCAGAACTGCGTCATGGTCCGGCTCAGCCAGCCTTCCTCGGGGTTACCGGAGGTCCGAGGGCTCGTCTCGTCTCTCTTCTGCAATCACAGCCAGGCCCTTTGGGACCAAGCAGTCCAGGGTGTCCTCGCTGCCGAGACTGTGCAACCTTGACAACCAGGGTCTGTTGAAAAGTGAGCAAGAGGAATCTCTTTCTCCAACTACCAAATCTTCTCTCAAAAGACCAACTGTGACTGCCCATCTGAAGGGTCAGCAGAAAAAAGCTAACCAGGCGAAACGGACTGGTACAGAACAGGGGGAGAAGGTGCAAGGTGCCACCGTCTCTGGGCCGACCTCCTTCCAGACCGATGGCTACCACCATCAGCCCTACACCCAAACCCAGCTACTACCGCAGCCATATTCAAACCTGCAGACCCACCACAACAAAAGCTTGACTCTCTCATCTGATGCAAGCATTGACCTCCCAAAGGTGGCTCACAGCGACATGAGAGTGAGCCTTGCTGTTAAACCCAACAGTAGAACAGACTTTGGTTTCCAGACTCATTGGGACTCCACAGTGGTGAGAGTCAAATTCATTCAACCTGGCAGTCCAGCGGAGCTTTGCCAGCTGTGTGTGAACGATGAGATTGTGACTGTTAACGGAGTTGCTGTGGCACACATGAACTACAACCAGTGGAAGGATAAAATGATGTCTTCCCTTCAAACCGGCAGTCTAACAATGGACATTCGGCGCTATGGGAACAAGGATTGGAGCACCAGTGAGGGGAGTCATCCTAACCAGTCAGGCCAGAACAGGGTGACCCTCAATCTGACTGCCGCAGCGCCTGGCCTGATAGGTTGCCCTGATCACCATGCCAACAGTGGTGCCTCTACAGAAACCGCAGTCAGGAACCTCAATGGGCAGACAGACAATGTTTTACAAGGTAAAGTCATGCATGGAGAGCTTTCTGACAACCACAGGACAGCCAGAAATAAagGAGGTTCAGAATCTGCAATATCTGACCTCCAGGTGCCATCCCTCAGCCCCTCCTCATCCAGCTGGTCGTGGGACCGTGAGGAGGATCGAAGGCGTCAGGAGAAGTGGCAGGAAGAGCAGGAGCGCCTCCTACAgaagCAATACCAGCGGGATCAGGAGAGGCTTGAATCAGAGTGGCAGAGAGCACAACAAGATGCAAAGGGGGAGTTATGCAGGAAGCCAGGGGCAAAACAGAACAGATTCGAGATGACCAATGGTGTCGAGAGCCCTGCCAGCACCCTGCTCCATGTGAATggactgaaaaacaaaaacagagaagaGCAGAGCCCCGACCGAGTTAAGCTGAAAGTAGCAGGTTCAAACCCTCAAAGTAATGCATCAGGAGAGCAGCATGACAAGATTTCGGGACATGTCTGGGCTGAGGACTCCTGTGGCTTTGCTGAGCTGTCTCCTGCACACAGGGCAAAGTCCTTGTCTACCCCAGCATTAGATGGCCCCTACAAACAGACAAGAGGTGATGAGAGAAAAGGACAAGGACAGTCTGTGTGCAAGGCTGAGAAAGACAGGCAGCAGATTTTGGAGGAGATGAAGAAAAGGACTCAGCTTCTGACTGACAACAGCTGGATACgtcagcgcagcagcagcttttACAAGGAGCCAATCTATGTTGGGGTACCTATGAAGAGGTTTGACTCTCTGGACGACCTGGATACTTTGCGTCAGACCCCACTCTCAACCACTACATTCAGTTACCCTCGCCCACACTCAGCTGCTGCAGGTTACAGTACTCCAAGTAGGAACTCCTCATCCCGCTACAGCACTGGATCGTTGTTATCCCAGAGACATGCATTGGTCAATTCTTCTCATCATGGCAGGATGGTCTGTGGCAGGAGgacttgctgtgtgtgtgagcgtgtccTGGGTAGTGGGGCAGCCATGGTCATAGAGGCCCTTGGTCTCTGCTTTCACCTCGCCTGTTTCCAGTGTGTGGGCTGCCACCGACATCTTGAAGGAACTGAGACTGGAGTCCAGGTTCGAATCCGAAACAGGAAGCCCTACTGTGAGCCGTGCTATTTCCAACTCAAGTCGGGTGCCCCATCCATGTGACCCAACATGCCGTACTTGAGATCACAGAGCAAGCAGACGAATCACTGGGAACTCGTGTTGGATAAATCTGCGAGAACCCAGTGGAAACATTGTCCACACAGCCAAGCCACGACTTTTGTCTCCAAACAGTAATTGCAGATTAAAACTCTGATATAAAATCTGTGGATCCACACGCAAAGCAGACTCTtaatggctgttttttttttgtttttttatcaaataTAGTTGACAGTTTGTCCGTTTTTCTGATTTGTTTCCAAGAAAATGTAGATTTAATATATGAAATAAAGTAATTATGGGAATTATATGAAATAAAGTAATTATGGAAATTGTTTGattaatgcttttattttaatgttagtGTTGCTATTTGTCATATCCTTGTTATATTTGATATTTGTTCAATAGTGCATTAAAGATATCAGATCTTTCTTGTTAATGTAGcctatttaaagtgatggttcggagtaatttcaccctagggtcctttgcaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638821.1 lncRNA upstream 29001 22159570 ~ 22160895 (+) True LOC120556188
XR_005638822.1 lncRNA upstream 29001 22159570 ~ 22160895 (+) False LOC120556188
TU38534 lncRNA upstream 60318 22128964 ~ 22129578 (+) True G29005
TU38533 lncRNA upstream 105495 22083945 ~ 22084401 (+) True G29004
TU38519 lncRNA upstream 300347 21886682 ~ 21889549 (+) True G28990
TU38655 lncRNA downstream 141024 22368129 ~ 22368503 (+) True G29085
TU38672 lncRNA downstream 180861 22407966 ~ 22408239 (+) True G29101
TU38711 lncRNA downstream 306837 22533942 ~ 22534868 (+) True G29135
TU38716 lncRNA downstream 321595 22548700 ~ 22580247 (+) True G29139
TU38717 lncRNA downstream 321595 22548700 ~ 22601559 (+) False G29139
XM_039795004.1 mRNA upstream 268020 21911406 ~ 21921876 (+) True LOC120555860
XM_039794999.1 mRNA upstream 317871 21720035 ~ 21872025 (+) False gpc5a
XM_039794998.1 mRNA upstream 321710 21720035 ~ 21868186 (+) True gpc5a
XM_039795000.1 mRNA upstream 419444 21720034 ~ 21770452 (+) False gpc5a
XM_039794087.1 mRNA upstream 480515 21699804 ~ 21709381 (+) True LOC120555410
XM_039794478.1 mRNA downstream 142246 22369351 ~ 22407710 (+) False cdh16
XM_039794480.1 mRNA downstream 147029 22374134 ~ 22377140 (+) True rrad
XM_039794477.1 mRNA downstream 150197 22377302 ~ 22407710 (+) True cdh16
XM_039794481.1 mRNA downstream 206406 22433511 ~ 22440373 (+) True nae1
XM_039794746.1 mRNA downstream 244404 22471509 ~ 22488379 (+) True dync1li2
TU38307 other upstream 786446 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 1428749 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2669678 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2691672 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2692023 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 320096 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 537614 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 640615 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 765032 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 909627 23136732 ~ 23137027 (+) True G29292

Expression Profile