RNA id: XM_039795398.1


Basic Information

Item Value
RNA id XM_039795398.1
length 3189
RNA type mRNA
GC content 0.47
exon number 13
gene id csnk1g1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15536974 ~ 15578092 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACCTCTGTCTATGCGAAGAAGGAGAGAGCTGCTAACTAACGACACACTCCGCTGTTAGCGTGAACCATCAGTCACAACAAGTAACAGCAAAAAGCTTTAACGTTACATTAAGCTCCGCTCGGGCAGTCGTGTACATTTTGGCGTGACAAATAACACAAGCCGTATCCTGGTCGTCTGGATTAATCACAGCGAAGGTCCTCCGCCTTCTCCTTCCTGTGACAGATGCTGGGGCCAGAGATCAGTCTGTTCAACTGTTAGAGGTGACAGGGTGAGGACGGGGGAGGAGTGTCGGCTAGCTGTACTAGGTTTTGTCTCATGAGAGTGACTGTGCCATCCAGGCACTGCCAGTGACCAGGGCTGTGGCTGTGGTGGGCCCGGCCCAGGAGGCCTTTTTGTACATCTTCTCAGGCCCCTGCTGACCTGTGCTGCTCACACCATGGATCAACAGAGAGATAAATATGGCGAGCGGCCTGCCAGGAGCACTAAAGTTTCCCAGGGAAGCCGCAGCGGACACTCGTCCCGACCATCTGGCTCCTCCAGCTCATCTGGCGTTCTCATGGTGGGGCCAAACTTTCGTGTGGGCAAAAAGATCGGCTGTGGAAACTTTGGTGAATTGAAGCTTGGTAAAAATCTCTACACCAACGAGTATGTAGCTATTAAACTGGAACCAGTGAAGTCGAGGGCACCACAGTTGCATTTAGAGTACCGGTTCTACAAAACACTGGGAACTACAGCTGAAGGTGTGCCCCAGGTATTTTACTTTGGACCCTGTGGGAAATACAATGCCATGGTTCTGGAGCTGCTGGGCCCAAGTCTAGAGGACCTCTTTGACCTTTGTGACCGGACCTTTTCACTGAAGACGGTCTTAATGATAGCTATTCAGCTGATTTCTCGAATGGAGTATGTGCACTCTAAAAACCTCATCTATAGAGATGTAAAACCTGAAAACTTTCTCATCGGACGGCAAGGAAATAAAAAGGAACACATCATCCACATCATAGACTTTGGTCTGGCCAAAGAGTACATCGACCCTGAGACCAAAAAACACATTCCATACAGGGAGCATAAGAGCTTGACTGGCACTGCCCGATATATGTCCATCAATACCCATTTAGGCAAAGAGCAAAGCCGGCGAGATGACCTGGAGGCCTTAGGCCACATGTTCATGTATTTCCTTCGCGGGAGTCTACCGTGGCAAGGACTAAAGGCCGATACGTTGAAAGAACGATACCAGAAGATTGGGGACACAAAACGAAACACTCCCATCGAGGTCCTCTGTGAGAACTTCCCAGAGGAGATGGCCACCTACCTGCGATATGTGAGACGGTTGGACTTCTTTGAAAAGCCAGACTATGAATATCTGCGAACTCTGTTCACTGAACTGTTTGAGCGAAAAGGATACACCTTTGACTACACTTACGACTGGGTTGGCAGGCAGATACCCACACCAGTGGGGTCTGTCCATATAGACTCTGGAGCATCTGCTGTGACGAGAGAGAGCCATCCTCACAGAGACCGGCCCTCACAGCACCAACCAATTCGAAATCAGGTGGTCAGCTCGACCAACGGGGAGCTGAATGCAGACGATCCACTGGCCGTCCATTCCACACAGCCCATTACACCTCAGGCAGAGGTGGAAGTGGTCGACGAGGCCAACTGCGTGAAAATGCTCAACCTGTGGTGCTGCTGTTTCTTCAAGCGAAAACGGAAGAAGAACACGCCGAGGCACAAATGATCATCCGCCACCGGCCTGAAACGCTCCAAGGTCCGGCTCAGTTGATTGTGATTTCAGAAATCAATAAGGTCCCATTCAGAATTAAAGAGGGAGACAACTGAAAGATCTTGATTGAATTGCTCTCTGGAGGGGACCCGTTAAAATGGTTTGTTGAGATGTACAAGACGCTTGTGTCTTTTGATGGGAGTCCCTTTTCacgttttcttcttttttttttttttttcctcttccaagatgtgttgaaatgttttgcagGCCAGTCGTCCAAATGGAAACCTTTTTAGTTGGAATTCTGCAgaggatacttttttttttatttattttttttattcccgaGACACCCAGCATTTGTATTTTTCTCTCCTCGTTTTTGACTTTTTGCTCCTGTTTCCCTTCTGTGGTATTGCAAAGGAGAAGACAGATCGACCTGTGGAATCTTGCCACCTTCAGCCAGTTGCATACTATGATTTCTTTGTTTGACTCACAAAATCACGTTTTCATTTCCCCTCTGTCAAGTCCCAGTTCAAAGTGGTTTACCCGTCGTTAAGTTTGCCAAACTCATTTGGACACAAAGCCCTTTTGGTCATTCCTGACGTGGGACTGAATGTAAACCTGAACACGTGGGAAGCCAAGAGTGTAACTGCCTATCCTCAGGCACAAAGAGCATCAGTCTGCCATTTGGCCCCTGCACTTTTTTCCTCCAAAGAGGCCAACCCTGGCACTGGGACCCGGGCCTGAGAGACCAGAAGACCAGAGACGCCTCCTGCACTGTGTTCTCTGAGGATGATTTCTGCTCACGCTGCTTGGTTAAAGCACTCCCCTTAACCACGGCGCCGTTAAAACACACTACAGTCGCTTTTGACTCACATGCGGTTTTGCTCGTGTTGGCTTTGTGATCATGAGCAGCGACCTGACACTTGTACATGGGGCTGAAAAACTATATGCTATTTATGCTATTTATCTCTTGGTTACCACCAGTTTTCTTACTAGTTCTAAATCATACACACTGAATGTATGGACAGAAAGGTAAATGACTTTGGAGCATTTATATAATCTGTCATGCGCATGGGGAAGGAAATTGCAGTTAAGGAGTTAAGaccaatgtttaaaaaagaaaaaaaaagaaaaaaagtgaggcCAAGATGAGAGGACGGGAGGGTCTTACATGTTCTTGATCTTAATGTGATGGTTAATAATGGTCTCTACACCAGTAGACACTGGAGGATGTTGCTTTGGATTGACGAGAGAAACTGGCGTGATGTGCTTTTGGAAATTAAATCCCAGCCTCTCAAACGCTGCTGTCCAATGCCTTAACCCCGACCAGTCGACCACCACATCACATTACCAGTGCGATAAACAAGTTGGCAGCATGATGGTTGTGAGGTTTGCAgtgcaatttattttatttcttttaggtCACCTGTATAATAAAGGCCAAAATTGTGGACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36724 lncRNA downstream 1637 15534000 ~ 15535337 (-) True G27582
TU36690 lncRNA downstream 31306 15479306 ~ 15505668 (-) True G27552
TU36692 lncRNA downstream 50509 15483110 ~ 15486465 (-) True G27554
TU36688 lncRNA downstream 54288 15475253 ~ 15482686 (-) True G27551
TU36673 lncRNA downstream 90465 15444326 ~ 15446509 (-) True G27545
TU36736 lncRNA upstream 18521 15596613 ~ 15596867 (-) True G27594
XR_005638713.1 lncRNA upstream 240518 15818610 ~ 15848699 (-) True LOC120555431
XR_005638712.1 lncRNA upstream 241371 15819463 ~ 15848699 (-) False LOC120555431
XR_005638714.1 lncRNA upstream 251796 15829888 ~ 15848699 (-) False LOC120555431
TU36829 lncRNA upstream 450795 16028887 ~ 16029172 (-) True G27659
XM_039795988.1 mRNA downstream 4964 15524344 ~ 15532010 (-) True LOC120556400
XM_039795916.1 mRNA downstream 99486 15433422 ~ 15437488 (-) False LOC120556362
XM_039795919.1 mRNA downstream 99486 15433423 ~ 15437488 (-) True LOC120556362
XM_039795918.1 mRNA downstream 100181 15433422 ~ 15436793 (-) False LOC120556362
XM_039795177.1 mRNA downstream 109375 15418952 ~ 15427599 (-) True LOC120555953
XM_039794905.1 mRNA upstream 1948 15580040 ~ 15591856 (-) True LOC120555812
XM_039794911.1 mRNA upstream 21883 15599975 ~ 15787368 (-) False neo1a
XM_039794909.1 mRNA upstream 21883 15599975 ~ 15787367 (-) False neo1a
XM_039794922.1 mRNA upstream 21883 15599975 ~ 15787365 (-) False neo1a
XM_039794919.1 mRNA upstream 21883 15599975 ~ 15787364 (-) False neo1a
TU36517 other downstream 693069 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1066629 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2247710 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2441208 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 3232150 12304539 ~ 12304824 (-) True G26924
XR_005638870.1 other upstream 61677 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 1930031 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 1931858 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 1932036 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2640030 18218122 ~ 18220550 (-) True G28121

Expression Profile