RNA id: XR_005638786.1


Basic Information

Item Value
RNA id XR_005638786.1
length 4310
RNA type transcript
GC content 0.49
exon number 29
gene id LOC120556047
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1587544 ~ 1642348 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggTCACCCACCCCTCTTACGCCCTGTAGAGCCACCCTTGTGGTGTCGAAATTGTAgaaatttgtatttaaattttttttaaatacaaaaagagaaaggaaaaaaacatacaaaaatggTGTAGGTGTCATTTAATTTGctatgttttatattatatggGGGGGAGAGATGTTATGATATTTATATTAGTGTTCAGGTAGTGGACAGGGTCAGACTGAAGGGTCAGGGGGGAGTGGTTGTGTGCTGATTTAACCGGGACAGTCACAGGTGTGTGGGAGGATTGCGATTTTGGAGAAGGTTACCTCCAGCTGGGTAGCTGAGGTCGCTAGCTGAAGAACACTACTGAAGACAAAGGATTGGACGACCTGCTTGTTTCCCCCACCACAAACTTTTGTACACCATTTAAAAATCGGAACTGAGACAACAAAGGAGGAGCGGGGCTGGAACGCCGAAAGAACCAAGCCTATTAGGCAATGGAGTGGTTCCAGAGGCAGTCGTCTTCTCCTGAAACGCTAAACTATGCAGAGTCTGAGGACAAAATGATGAAAGGCTATTCTTTGGAGAAGATGGATACTCGAGGAGTCTCTTTTAACGAAGATAGTTTCCGACGGAGAACTGGATCTGTGGCCTCCAGTCCAGAACATACTGATTTGGACAACGGTGAAATAGCCTCCCCTACCCTATTCGGAAAATACCACCAGAGCCTTCAGACCCTCAAACCCTTCCGCTGgtcctcatcccaGTCCCACCCTTTGGACAATGCAGGTTTCCTGTCATTCACAACCTTTGCCTGGATGACCCCCATGATGTGGGCCTTGTTCAGGAATAAGCTGGACATGAGCTCTCTCAACCTGTCTACTTTGGATGTAGCCGAAACCAGCGGAGAAAGGCTCCACAGACTCTGGGAGGAAGAAGTGGCAAAGGTGGGCCTGGACAAGGCCTCTGTGTTTCGAGTGATCCTTCGCTTTCAAAGAACAAGGCTGATTCTGTCTGTCATTGTTGCTGTCCTTGCCATGATGGCATCTTTTCTGGGGCCGgCGGTTCTGGTCCATGAGATCCTAAAATATGTTGACGGCCCGGAGAAGTCCACAGTATTCCATGGTGTTGGTCTGTGCTTCGCTTTGTTCACATCAGATTTCTTCAAAGCCTTCTTCATATCCTTGATGTGGGCCTTGAACCTGCGCACTGCTGTCAGACTGAAGGGTGCCTACTCTACATTGGCCTTTCAGAAAGTCATCTCTCTGCGGATGCACAGCGGCATTTCAATGGGAGAGATTATTAGTGTTTTGACCAGCGATGGCCACAAATTATTTGAGGCAGTACTGTATGCAAGCTTCCTAATTGCCACCCCAGTGCTCTTTATTGTGTGTACCATCTATGCCTGCTACATTCTGGGCTATACCGCACTGACTGGAGTCTGCATCTACCTCATCTTCCTCCCTGTACAGATTGGCTTGGCCAAGCTCATTAACATATTCAGATGGAAAAGCATATCTATAACAGACAGCCGTGTTCGTACAGTGAATGAGATTCTCAGCAGCATCAAACTCATCAAGATGTACGCCTGGGAAGATTCCTTTGAGAAGAAGATCGCAGGCTTAAGGAAAAATGAGAAGAAGGAACTGCAGAGGACCAGTTACGTCCAGAATGCCAATAACAGCATCACCAGCATTGTCCCCGCCCTTGCCTGTATTCCCACCTTCATTGTACACACTATGTTGGGCTTGAAGCTCGACACGTCTGATGTCTTTACCACCATCGCTGTCTTCAACGCTATGAGGTTCTCCCTAGCTCTACTGCCCCTAATTGTAAAGTCCTTGGCTGATGCTGCTGTATCACTAGCAAGACTCAAGAAAATATTGGTGATCCAGAATCCAGAGAGCTACCTGATCCAGAAAAAAGACAGTGACTCAGCCATAGTGATGAAAAATGCTACGTTTTCCTGGAGCCAGCCAGAGTCCCCACCTAGCACAGCCAATGGGGTGAAGGGACACAAAGTGGAGGACTTGTCCCAGAATGGGAAGACTGAAACCTTGTCAACCCTGAGAAACATCTCCTTCACGCTGCCTAAGGGCAACCTGCTTGGTGTCTGTGGGAACGTGGGGAGTGGAAAGACGTCGCTGATTTCCAGCATTTTGGAACAGATGCACCTCCTGCGGGGCTCCCTCACAGCTGATGGGACATTTGCCTACGTTTCCCAGCAGGCTTGGATATTCCATGGAACTGTTCAAGAAAACATCCTGATGGAGGAACCCTTTGACCAGTCCAAATACAGCAGAGTTGTGGATGTCTGTAGCCTCAGAGCTGACCTGAACATCCTCCCATATGGTGATCAAACTGAGATTGGAGAGCGAGGGCTGAATCTGTCAGGGGGGCAGAAGCAGAGGATCAGCCTGGCCAGAGCGGTCTACTCCAAGAAGGACATCTTCCTTTTTGACGATCCACTATCTGCTGTCGATGCCCATGTGGGGAAACACATTTTTGAAGAATGCATTAAGAAGGAGCTCCAGGGAAAATCTGTCATACTGATTACACACCAGCTCCAGTATCTGGAGTACTGTGATGACATTTTAGTTCTGGAGGATGGCGAGGTGCTGGAGGCTGGGAACCACCGGGCCCTGATGAAAGCCAACGGACGCTACGCTCAGCTCATCAGCAACTACCAGATGGAACAGTCCCAAACTcagaatgaggaggaggaggaggaagtgtcACCCAAACACACTGCCCAGCTGAAGGATGTTGGGCTAAGAGAAAGCACAGACGGCGGTTTAGTGAACCCAGCATTTGACATGTCAGATGAACAGGATGATGGGACAACAGCTGACCAAAAATCTGCTGTCAGTGATCAGCTGGTCAGTCAGGAGTCTACCACAGAAGGTTCCATCTCCTGGAGAGTCTACCATCAATACTGCAAAGCAGCTGGAGGCTACATCGTCTGCTTCCTCGCCATCCTGAACATCTTCCTGATGATTGGCTCCACAGCCTTCAGCAACTGGTGGCTCAGCTTCTGGCTGGGGCAGGGTGATGGGTCATCCAATGGGACAACTTCAAACCAGGGCGACATCTCAGAAAACCCAGACCTGCACTTCTACCAACTTATTTATGGCGTGATGGGTGTTGTCACAGTTACACTTGCCATCATCACATGCTTCTTCTTCACTTGGGTCACCATGAAAGCATCCTGTAAACTCCACGACACAATGTTCACGAAGattttctcCAGTCCCATGAGTTTCTTTGACACAACGCCAACAGGCCGCATTCTCAACCGCTTCTCCAAAGATCAAGAGGAGGTGGACATCGCGCTTCCCCAAAACATGGACCCTTTCTTTCAGTTTAGCCTGCTGGTCACCTTCACCATTATCATCATCTCGGCTGTCTTCCCCGCCATGCTGGTAGCTGTGGTTGTTATGGGAGCTTTGTTCACCCTCATCCTCTTTATATTCCAGAGGAGTATCCGTCAGATGAAGAAGATGGAGAACATCAGTCGCTCTCCCTGCATCTCTCTCACCACCTCTACCCTGCAGGGCCTTAGCACCATCCATGCCTACAACTTAGAAGATAGCCACATTAAACTGTTCAAGTCACTGAATGACATCAACTCCAACTACTTTTTACTGTTTAACTCTGGAACACGTTGGCTCTCCTTCTGGCTGGACTTCATGGCTGCGACCATGTCCTTGTTGGTGTCTCTGTTCGTAGTGCTCAGCAGTAATGACTTCATCAATCCGGCTTTGAAAGGCTTGGCCATATCCTACACCACACAGCTGACAGGCATGCTTCAGTACGTAGTGAGGCAGTCGACGGAGGTGGAGGCCAGATTCAACTCGGTGGAGCGGCTGCAGGAATACATCACGGATTGTAAGCCTGAGGCTCCCAGACACATAAAGGAGGCTCAGGTCCCAAAGGACTGGCCAAAGAGTGGAACCATCACCTTCCAGGACTATAAGATGAGGGAAGTCCTCTTTAGGCGTGGCTCTGTTCAGGCTGGTGGAGCCAGCAGCAGGAACCATCCTGATAGATGGTGTGGACATTATGGACATTGGTCTGCAGGATCTGCGCAGCAAATTGTCTATCATCCCCCAGGATCCCGTTCTATTTATTGGAACAGTCCGATACAACTTAGACCCCTTCAATAGCTACAATGATGAGGAGATCTGGAAGGCACTGGAGAAGACCTACATGAAGGACTCAATCTCCAGACTGGAGGGGAAACTACAAGCACCGGTGCTGGAGAATGGGGAGAACTTCTCCGTAGGAGAAAGACAACTAATGTGTATGGCTAGAGCACTACTCCGCAACTCCAAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33736 lncRNA downstream 75274 1510165 ~ 1513612 (-) False LOC120556048
TU33671 lncRNA downstream 130344 1458037 ~ 1458542 (-) True G25039
TU33610 lncRNA downstream 310069 1278569 ~ 1278817 (-) True G24988
TU33609 lncRNA downstream 321926 1266686 ~ 1266960 (-) True G24987
TU33600 lncRNA downstream 334262 1252718 ~ 1254624 (-) True G24978
TU33754 lncRNA upstream 18146 1660494 ~ 1660735 (-) True G25110
TU33755 lncRNA upstream 18484 1660832 ~ 1661353 (-) True G25111
TU33756 lncRNA upstream 19011 1661359 ~ 1661697 (-) True G25112
TU33757 lncRNA upstream 19380 1661728 ~ 1662486 (-) True G25113
TU33799 lncRNA upstream 90670 1733018 ~ 1740823 (-) False cep89
XM_039795403.1 mRNA downstream 33240 1511493 ~ 1555646 (-) True LOC120556048
XM_039794469.1 mRNA downstream 80978 1459164 ~ 1507908 (-) True LOC120555617
XM_039794471.1 mRNA downstream 80997 1459164 ~ 1507889 (-) False LOC120555617
XM_039794470.1 mRNA downstream 99537 1459164 ~ 1489349 (-) False LOC120555617
XM_039795079.1 mRNA downstream 131778 1410674 ~ 1457108 (-) True LOC120555898
XM_039795088.1 mRNA upstream 22422 1664770 ~ 1740839 (-) True cep89
XM_039795405.1 mRNA upstream 101844 1744192 ~ 1774283 (-) False rhpn2
XM_039795406.1 mRNA upstream 101845 1744193 ~ 1774421 (-) True rhpn2
XM_039796022.1 mRNA upstream 176083 1818431 ~ 1831946 (-) True lrp3
XM_039796021.1 mRNA upstream 176083 1818431 ~ 1831876 (-) False lrp3
TU33668 other downstream 131795 1431968 ~ 1457091 (-) False LOC120555898
unassigned_transcript_137 other upstream 190973 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 633127 2275475 ~ 2277091 (-) True G25228
TU33896 other upstream 633127 2275475 ~ 2276009 (-) False G25228
XR_005638726.1 other upstream 4513874 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 5000098 6642446 ~ 6644606 (-) False dok4

Expression Profile