RNA id: XM_039795404.1


Basic Information

Item Value
RNA id XM_039795404.1
length 3794
RNA type mRNA
GC content 0.41
exon number 2
gene id zgc:165481
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1674741 ~ 1698359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATCTCCCTCTGGTAAGAAGCTGTCCTCCCCTCTGCTGCCTCCTCCAACACTGCCAGTCTGGTTGACGCCTGCTTTCGGTACACctgacatacacatacacacagaggaaTGAGATGTGGACTGTTGCTATGAAGGAGGCAGATTTACATGAAGGACAGCGCAGCAGAGACAACTGGAGTGGAGGAGGGGGAGTCACACACATGGGGACGAGACCATGACTTGAAGATGAGCGGTTCTCAGGCTGAGTTAGAGGAGAAGGACTGTCCTCCACCAGAGGAATTAGAGTGTAAAATCTGTTACCAACGCTACAATGCCCACAAACGCAAGCCTAAGATCCTGGACTGCCTTCACCGGGTCTGTGCCCGCTGCCTCATTAAGATCCTGGACATTGCTGACGGGGCAGGCTTCGTGTCCTGCCCCTTTTGCCGACACCAAACCGAGATCACAGAGTACGAGGTGTCAGCCCTCCCTGATGATGCGATCATCATGTCCCACTTGGCAATGCGGGACAAATCCTGGAGCTCAGACCACAACAGGGAGGTGGTTTTGACTCCAACGGGTTTCTGCTCCTCCAGCCCATCTCAAGATTCCTCCAACTGCCTGGTCATCACTATAATGGAAGTGCAGAGGGACTCACAGCACTCCCCAAGCCGAAACGGCAGCTCTGACATCTATGCTGAGCAGAGCCTGGACTCAGTATCGATGGACTCCAATGGACAGGCTGATCAGGACGCTCTGTCCAAGTTCTGTAATCACGTCCCACGCATCCTGGTCTGGTTGCTGGGTTTCTTGTACTTTGGCTCACTGCCTCTAGGAATCTACTTGTTGGTGATCCAGAGAGTGACACTGGGTATTGTATGTGTTAGCTTGGTGCCATCAAGCCTGACAGTTTGCCTTGTCTATGGGTTCTGCCAGTGTCTGTGCCAGGGCATGTGTGACTGCTACTCCAGGGGCTGATAGGATGCTACATCAAAACTGGTGGTCCTAGGATGGGATAAAGTCAGCTGCAGTAAACAGGTTTTTGATGTGTTTTGTGAATAGATAGAGGGCCCAAAGGTAAAGATGATGCCACCTTCTACACAGTCTTTAAAAGCCTACCAGTCAACTATCTTCATGCAAATAATAGGCCAGTACAGAGACCTGAGACTGCCTTTAGATCTCAGAGCCCCTGACAATATGTGTTAGTTGGAGCAGCGCCTATACATTTCTGTAATGTATGTATACAACCTTTATTTgttctgtgctgtgtgtgaccTAGTCTAACATAACATTTGAAAGCAGACCTTTAACGTTTGACTTACATAACGACAGCACTGATAAGAGTCCtgggccctcatttatcaacactGGTACCAACATTCAATCTTTTTAAAGTGAAACGTGGGATTTACATTAACAGTCAGAGTACTTACTTGGTTTTCTCAGGATTTTCTTAAGTTAGTTAATAATTGCATTTAAGCATGACTGAATAATTGCGAGCTCCCAATAACAGAAAGGGAGGAAAATCAATGTTGTACGCGATTTTGGCCACCTGTTAAAATCAAAGGCACCTCTTAATTGATTGAGAGTACAAATGCaaaggtttatttttttcattaacttttattttaatgagAGTTCTTCACATCTATAAGCCAGCATTTATGGTAGAACTAAATGTTAGCAAAGATTTCTTCCATCTGTTAAAGCTACAGGTAAATCAAAGTTgaatatatgttctttattttatttttttattaataagtcTTTTGCAATGCTGGAATCAGTTGGAAGCCTTTGGAAGCTAGTGGGGGGATGTTGTCGTGGGACCGTGGTGCAGTTTGTTTATAGCCTAATGTTAGCTTTACACTCCTGGATTGCATTTATGCTTCTAAAATCATGAAAGTAGTGTCCATTTCTGAAGATTATCTTGCTGAACAAAACATGTTAGCATCATAAACCTTTGTTTGCCATAGAGCTTATTTTCTGCAATAACCCAAAATGAAAAAACCCTTGGCACTTTCGGTTTGGCCTCCAAAAACACTTCTTCCCTGCATCACTCTATGACTACtgacaaacaaagaaaacatacaGGCTACACCCTGATTGGACAAGTGCTTTCACTCGCTTACTGCTCCCGGATTTCAAACAGACCAACAGCTAATTTGGAAACATACTTttatattacaaaacaattcaCCTAAATGTAAAGGCAGCCCGATCAGGCTCCGAGATGACGTTATCTTCTGCCTAGAAGTGATAaatttacagctcacagcaacttaatatgATATAGTCTCTGGCATTTGATATTGAGTGTCTGTGAAAAATGTTGGTGCACATTTATGATACATCGTTAGCATGCATTAGCTCGGAGGACTAATTTGGCTTGGTTACTATATAACGTGAACGTCACAGTCACCCTGAACATCACGCTCAACCTAGTTAAACAATCTAGCAGTTCAACAAAGCATTGCTTTCAGGTAAAGCCCTAACTGCTTATTTTATGTGTCAcacttgttctctctctctccatctctctctgtctttctctctcaatgcctcaaatacagacacacaccatacaGAGTTGTGTTGAATGGATGTGGTGCATCTGAGGTATACACGAGACTCATATCTCAGGTTTTTTGATACTCCATTAATGTTAAGCAACACACTTTCCATTCAGTTTCTTGTTGAGTTGAACATAGCAAGGCTgctctgttgtttttatttattttgtggtACTGGTTGTGAAAAGCTCATTGAACTCAAAAGCACGGATTGTGGCTATGGGAGTCCTCTGTTACTTTCATGCTGTAAGTCACATGCACATTCTGCCATACTAAAGCCATGcagatttgttgttgtgtgGCATCTCAAGGTTGTGAGCATTATTTATGTGGCATtttgattttcatttacatgtaaGACAAACACTCTCCTACAAGTACCATCCTGGCATATGGACTCCTGAAAGAAAGGTCACAATTaactatgtgtgtatttgtatgtatatgtgttattTTAACAATTATAATTGTTTTTATGTGACAAATGCTTTGCTGAGTACAGCACATGTATGTagagaaaaaaagttattttgatCAAGTCTGCTGAAGATTTAGGTTTATTCTATGGATTCCAAAAAGCATATGACCAAAACATACATTTAGTGGGTCAAAAGTTTGTCTTTTAAAACATCTTGAACTGCAGTCCTACCCAGCAATGAGTGACATACCCAGCGCTACTTAAAGGAAAGCTTTAGACCATAGATTGAGAGTTTAATTACTGTTCATAAGCATGGTGGTTAAGAATTTTTGGGTTTTATCAATTCACATTACTTTTGGGAGAGGTTGAAACTATTACGCACATTTGGCAATTACCAACTTTCTTTTACTCACAAGCATTCTACACTTCATCATCTTCTAGTAGTCCATTTAGAACCTTTTCTGTACAATGTTGACAACCGAGGGCCCTGGGCTGATAACTTTGAGTGTATTTAATGATAAACTACAGGTAATGATATTTCTCATCAAAATGGATACTGTATGTAGCATTTTGAAAAGAATATTAATTTTATGCTTTACCCTTCCTCTACAATGTAAGTCCTGTTCCTTCTGTGAtgttatattctatatattctttTCTTACCTTTCCATTGTCAACTTCTTTCTACTGCTGTTTCTATGCCCACACCCTCtgttttctgtgtctctgtctatgaTTAACTGACTGCAGCTCTCAGCTTAGTGCCACACCACAGATTACAGAAGCTACTAGACAATGAAATAAATGGAGAATTATTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33634 lncRNA upstream 258994 1413095 ~ 1415747 (+) True G25008
TU33637 lncRNA upstream 288477 1386048 ~ 1386264 (+) True G25011
TU33613 lncRNA upstream 371789 1302719 ~ 1302952 (+) True G24991
TU33606 lncRNA upstream 415925 1258519 ~ 1258816 (+) True G24984
TU33594 lncRNA upstream 420150 1253197 ~ 1254591 (+) True G24972
TU33792 lncRNA downstream 70923 1769282 ~ 1774440 (+) True G25144
TU33862 lncRNA downstream 484447 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA downstream 484447 2182806 ~ 2183770 (+) False G25203
TU33885 lncRNA downstream 516888 2215247 ~ 2215548 (+) True G25220
TU33890 lncRNA downstream 613245 2311604 ~ 2312082 (+) False adamts18
XM_039796055.1 mRNA upstream 289666 1378010 ~ 1385075 (+) True LOC120556440
XM_039796056.1 mRNA upstream 289666 1378010 ~ 1385075 (+) False LOC120556440
XM_039795697.1 mRNA upstream 310015 1312448 ~ 1364726 (+) True LOC120556244
XM_039794192.1 mRNA upstream 362981 1308822 ~ 1311760 (+) True LOC120555491
XM_039794041.1 mRNA upstream 405738 1262950 ~ 1269003 (+) True LOC120555381
XM_039795363.1 mRNA downstream 91594 1789953 ~ 1817994 (+) True slc7a10a
XM_039794589.1 mRNA downstream 341104 2039463 ~ 2182754 (+) True phkb
XM_039794588.1 mRNA downstream 341105 2039464 ~ 2182754 (+) False phkb
XM_039794587.1 mRNA downstream 341105 2039464 ~ 2182754 (+) False phkb
XM_039795089.1 mRNA downstream 542055 2240414 ~ 2312096 (+) True adamts18
TU33826 other downstream 140974 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 383599 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2086574 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 2872014 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4335850 6034209 ~ 6035193 (+) True G25708

Expression Profile