RNA id: XM_039795409.1


Basic Information

Item Value
RNA id XM_039795409.1
length 2938
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC120556051
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15374188 ~ 15392333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAACTGGTGTTATTCTTATCAGTTTCACTATGCCCTCCTCTTGAGGCGCAACTTTTTTACGTCTGGTCTAGCCAGTTAAACTCCATTCTGCCTAAATTCGGCTGAGCTCCACCTTCATCAGTCTTTCAGTCTTGTACGAGAACACATTTACTGAAGGCTCCATACAAAACCTGTCTATTAGGTGGGACTTTAAAGCTTTGGAAAGGAAGTGTGGCTTAAGGGTGGCTCACGTACATGCAGTGCAACTCCATACTCCTTCTCCAACATTGGCATGTTTAGACTTCCTGTCTGACTGAGGAGGTGAGATGCTAGACACATTCAAACTGGGCATCCTGTTGCTGAGCCTGACTCTGGTCCTGTTAGGCCCAGCCTGCCAAGCCTCTTCTCTGGGACTGACGGTCAACGTTGTGCCCCTGGACATCGATGGAGGGAATACGGTGCGGGCTTATTTCAGTGCCATCGCTCCCATTCCTTGTCCAACTCTGTCTGGACTGTGTGCTGAGGGGGAGGACTGTCAGGTCTACACTACCTCATCACCTTTCACCGGCACTAAACCCAACCCTGGCTGGTGTGTCCGCCAGTGGCAGAAAACTGTCCCCAGCAATTACAACGCCACCATAACTTTAGGGTCCAACACAGAATTTTATGTGTCAATGAAAGCAGGACCACATCTCCGGGCAAACAGTGGGAGACTCAACCGACCTGCTTTTGTCGGTCTCCCTCCTCCACTTAGGGCCCGTGTGAACTGCCCTCACGATTTCCATTTGTCGGTCAAAGACCTGGATGGTGACAGGGTAAGATGTCGCTTTGCCCAGCCCGATCAGGGAGAGTGTCTCAACTGCACTCAGCACTCTTTCATAGAGCTGGACGAGGAGAAATGCATGTTGACATTCACTGGAAAAGCACCGGCAGGACAGTATTTCCTCTACCTGATGGCGGAGGACCGGATTCCTGTGCCCAAAAAAAGCCACATCACAGACAACAAACCCCTCAGCTCTGTCCCTgtgcagctctctctcactgTGGAGGAGTCGACTTCCAGCTGCAGTGATGAACCGGTGGCAACAGGTGCGACCCCCAAAGAGGACTCCATGCTGTTTGTCCTGCCGTACCAAGAGGTGCAATTCACCACCGACTTTATGTCACAGCTGGAGAGTGTTTTAGAGGTAGCAGTGGTTGGTCCCCCTGAACTCTTCAGGGTTGGTTTTAAATCAATTGGACCCCTGGCAACCATGACCATGGCCTGGGTCCGCTCTGAAAACAACCTGGCCCGCCTTTTGCCCATCTGCTTTGCTGTGAATACCATGAGTCTGCAGTCAGAGCCCAGATGCGTGTGGCTGTACCAAAGGGAGATGAGGAAACTACCTGCTGGAACAGAGCTGACGTGTGAGAAGACAGAAATGACCCTGGTGCTCCCTGTCACCTCCCTGAGTAACATCAACCTGGCCGAACTGCAGCTCAACAGCCCCACCTGTCCCGTCAcctacaacaacacacacctgACTGCACATATCTCCTTGACTGGCTGCGGCACCAAGACTGTGAGCTCTGGTTCAGAGCTGGTTTACACCAACACCTTGCAAAGTGTACGTCCCTACACTATGGTCAGCCGCCAGCCCTCCCTAGTCCTCCCTCTGGCCTGCCGGATCCCTGGAGCCCAGGTCAAGGGCCTGCAGTACAACGTCAGCATGCCCACAGAGAAGGAGACCTTCGGTGAGTTCAGCATTTGGATAGAATTTGACTTACCAGGAGAGGGGCCCCTGAGAGAATACACGGGCATACCCACACTTCGCTCCATCCAGATGCCGCCAGGACGACTGCGTCGAGAAGCGGAATCACCATCAGACAACTCGAAGAGCATCTCCACTAATACCAGCACTTCTACGGGAGGACCGAGGATCGGGTCCAGGATCGAGACACTGGACCTCCTGGTGTTGTCAAACTGCAGCATTGCTCAAGCAGAGATGGTAGTGAGCAGTTGTATTGAGTCTGAGACGGCAGACTTTGCAAAATCCTACCCCCTTCTGGAGCAAGGgTGTGCAACTTCCAACAGCACATTAGAGATTGTTACAAGACAAAGCAATTCCAAGGTTTACCGCCTTGATTTGAGCTCCATGAAGGCCGAAGGATCTACGATGTATGTCCAGTGCACAGTCAATCTGTGCATCGCCACCGGGCCCTCTCAGACGTGCCCTGATCTGTGTACCCGCTCCATCAATCCAAGCTCATTATTGGTTGGCAGTGTGTTTACCACCGCCTACACCGTTCGCTCAGGACCCGTTAGACTCGTGGTCACCCCAACCACACCAGCCACAGCAACCTTCACGACTACTACTACAACCACTACTGCACCAACTacaacaactaaaactactacTGTTACTGTTCCAAATACCACAGCGGCCCACAGCACCACCACATCACATTCTCTAGAACAGGCCTCAGCCATGGCAGCAGGAGTGATTTTGACTATCAGCATATTTCTTCAAAACATCGTCCTTTACTGAACATACTGCTGGATGATGATCTGTCAGGATATGAAGCACTACATTTGCCTGTTTTGGACATTTGAAGTTTTAATCCACACATGATTACACCGTACATATTAAGCTTTTCCAGAGAAGCGAATACAAGCGAGAGCACCTTACATTACtgtcaaaaaactaaaatatattgCTGAACTGCTCACATTGACTAATCATTATTACTGTATCTCAAATCACAAGTAGTTATAGGATGCTAAAGGATGTGACATAGACAAGGGGTCACACAATAAAATATTCTCCCTAACATGGggctttattttaaatttgctTATATGGGGAGCCCTCGAGTCGGTGGACTTTGTTGCATGTtattcttcctctctttcccctcACTTCctgtcaaaaaagaaaaatatatttttctataaTAAATTGTTTGTATAACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36562 lncRNA upstream 308679 15062219 ~ 15065509 (+) True G27459
TU36556 lncRNA upstream 320569 15047877 ~ 15053619 (+) False LOC120556271
TU36558 lncRNA upstream 320569 15047877 ~ 15053619 (+) True LOC120556271
TU36557 lncRNA upstream 320569 15050283 ~ 15053619 (+) False LOC120556271
TU36548 lncRNA upstream 356683 15016584 ~ 15017505 (+) True G27449
TU36704 lncRNA downstream 131641 15523974 ~ 15531915 (+) False G27565
TU36705 lncRNA downstream 131641 15523974 ~ 15530314 (+) True G27565
TU36708 lncRNA downstream 141670 15534003 ~ 15535415 (+) True G27566
TU36709 lncRNA downstream 153158 15545491 ~ 15545779 (+) True G27567
TU36710 lncRNA downstream 154111 15546444 ~ 15546655 (+) True G27568
XM_039795411.1 mRNA upstream 116 15362199 ~ 15374072 (+) False taldo1
XM_039795410.1 mRNA upstream 116 15362200 ~ 15374072 (+) True taldo1
XM_039795020.1 mRNA upstream 220073 15079794 ~ 15154115 (+) True ddb1
XM_039795749.1 mRNA upstream 320566 15047902 ~ 15053622 (+) False LOC120556271
XM_039795750.1 mRNA upstream 320566 15048240 ~ 15053622 (+) False LOC120556271
XM_039795174.1 mRNA downstream 1451 15393784 ~ 15418775 (+) True LOC120555952
XM_039795175.1 mRNA downstream 3841 15396174 ~ 15418775 (+) False LOC120555952
XM_039795173.1 mRNA downstream 3842 15396175 ~ 15418775 (+) False LOC120555952
XM_039796045.1 mRNA downstream 49122 15441455 ~ 15446492 (+) True LOC120556433
XM_039795275.1 mRNA downstream 82814 15475147 ~ 15486451 (+) True LOC120556001
TU36145 other upstream 2136369 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2263849 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3342460 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 5514188 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5769752 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 49144 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 82831 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2332215 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3169562 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4094913 19487246 ~ 19487533 (+) True G28581

Expression Profile