RNA id: XM_039795411.1


Basic Information

Item Value
RNA id XM_039795411.1
length 1504
RNA type mRNA
GC content 0.49
exon number 9
gene id taldo1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15362199 ~ 15374072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGCTCCCGTCTCTCTGACATTCCGCCTGCTCTCACGTGTTTTCTGTGTATAAAAGGGTCCCAGTCTCTCATCATGTCTACTGTGTCACCAGACAAACGGCGAAAAATGGAGTCAGCGctgaaccagctgaggaaacacaCTGTGGTGGTGGCAGACACCGGGGATTTTAACGCCATTGACGAGTACAAGCCACAAGATGCCACCACTAACCCTTCTCTTATCCTGGCTGCTGCCAAGATgcctgcctaccagcacctgtTGGATCAGGCCATTAAATACGGCATCGCCAAAGGCGGAACTGAAGAGGAGCAGGTCGCCAACACAATGGACAAGCTGTTTGTGACTTTCGGGCTAGAGATCCTCAAGAAGGTCCCAGGCAGAGTCTCTACTGAGGTGGATGCCAGGCTATCTTTCGATAAAGATGAAATGGTCGCCAAGGCCCTGAGGTTCATCGCTCTCTACAAAGAAGCAGGCATTGACAAGGAGCGTGTGCTCATCAAGCTGTCATCCACATGGGAAGGAATCCAGGCTGGCAGggAACTCGAGGAGAAGCACGGCGTTCACTGCAACATGACCCTGCTGTTCTCTTTTGCTCAGGCTGTGGCCTGTGCAGAAGGAAAGGTAACACTTATATCACCCTTCGTTGGACGCATCCTCGACTGGCACAAGGAGAATACAGGCCGCACAAGCTACGAGCCCCACGAAGACCCAGGTGTGCTGAGTGTGACCAAGATTTACAACTACTACAAGAAGTTTGGCTACAGCACGGTGGTGATGGGCGCCTCCTTCAGAAACACGGGGGAAGTGAAAGCCCTGGCAGGCTGTGATCTGCTCACCATCTCCCCTGGGCTGCTAGCGGAGCTAAGCCAGGACCACAGCACCGTCACAGAGATGCTCAATGTAGAGAAAGccaaGGCCTGTGATCTGGAGAAGATCCACCTAGATGAGAAGGATTTCCGCTGGCAGCACAATGAGGACCGCATGGCCGTGGAGAAACTGTCTGACGGCATCCGCAAGTTCGCTGCTGATGCCATCAAGCTGGAGACCATGATCAAAgAGAAAATTCTCAATGTTAAAAACGGCCAGTAGTTAACAGATTTGGCATCTCCTAATCTGACCAAACTCCAGGGACCCTTCTCCTGAATGGACACCTTTCCTCTGTTTAGGCTGGGATTAACTCTCGTCTGTCTTCTGACCAAACATACATGGTGATTGATGCTAATGTTGGTGTGGAGTTGACGTGAAATAGTCTTAATATTTACTAGAAATTTGACCAGAAAAGGGTAAAAAACGTTTAATGTCTTAATTAGTTTTGGTATTGCTGAGTAATATCATGTGACTGCTGGAAAGGACCATGGGCACTTTTTTGGCAGGAAAGGACCACAATTGTCAACACCATTTGGATGGGGGTTGAGGGTAGAGCTTGATAAAGACCATTGTACCATCATTCCTCAGAATATAATCTTTTGCTTTTTCAATGAATAAAAATCTCTGTCAataaa

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0005737 cytoplasm cellular_component
GO:0004801 sedoheptulose-7-phosphate molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36562 lncRNA upstream 296690 15062219 ~ 15065509 (+) True G27459
TU36556 lncRNA upstream 308580 15047877 ~ 15053619 (+) False LOC120556271
TU36558 lncRNA upstream 308580 15047877 ~ 15053619 (+) True LOC120556271
TU36557 lncRNA upstream 308580 15050283 ~ 15053619 (+) False LOC120556271
TU36548 lncRNA upstream 344694 15016584 ~ 15017505 (+) True G27449
TU36704 lncRNA downstream 149902 15523974 ~ 15531915 (+) False G27565
TU36705 lncRNA downstream 149902 15523974 ~ 15530314 (+) True G27565
TU36708 lncRNA downstream 159931 15534003 ~ 15535415 (+) True G27566
TU36709 lncRNA downstream 171419 15545491 ~ 15545779 (+) True G27567
TU36710 lncRNA downstream 172372 15546444 ~ 15546655 (+) True G27568
XM_039795020.1 mRNA upstream 208084 15079794 ~ 15154115 (+) True ddb1
XM_039795749.1 mRNA upstream 308577 15047902 ~ 15053622 (+) False LOC120556271
XM_039795750.1 mRNA upstream 308577 15048240 ~ 15053622 (+) False LOC120556271
XM_039795511.1 mRNA upstream 397137 14889390 ~ 14965062 (+) False kcna4
XM_039795510.1 mRNA upstream 408954 14889390 ~ 14953245 (+) True kcna4
XM_039795409.1 mRNA downstream 116 15374188 ~ 15392333 (+) True LOC120556051
XM_039795407.1 mRNA downstream 116 15374188 ~ 15392333 (+) False LOC120556051
XM_039795408.1 mRNA downstream 116 15374188 ~ 15392333 (+) False LOC120556051
XM_039795174.1 mRNA downstream 19712 15393784 ~ 15418775 (+) True LOC120555952
XM_039795175.1 mRNA downstream 22102 15396174 ~ 15418775 (+) False LOC120555952
TU36145 other upstream 2124380 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 2251860 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 3330471 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 5502199 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5757763 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 67405 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 101092 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2350476 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3187823 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4113174 19487246 ~ 19487533 (+) True G28581

Expression Profile