RNA id: TCONS_00073572


Basic Information

Item Value
RNA id TCONS_00073572
length 2707
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_037392
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 44391254 ~ 44420380 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATGTCTAATTGATGCATGTTTTCATCTGGATTTTGTTCTTGTTTGTTGATAAGCTACATATATGTACagtcaacggccactttattaggtacacattccaactgcttgttaacacaaatttctaattgcatggcagcaactcaatgcatttaggcatgtaaacatggtcacgacgatctgctgcagttcagactgagcatcagaatggggaagaaaggtgatttaagtgactcgatttctgctgcgacattcggattttagggtcagaatttggcgccaataacatgaaagcatggatccatcctgccttttatcaatggtttaggctggtggtggtggtgtaagggtttaagggatattttcttggcacactttgggcccattagtactaattgagcaccatgtcaatgccacagcctacctgagtattgttgctgaccatgtccatcactttTTGACCACAGTGTCATAAaacttgaatcatctcagactggtttcttgaacatgacaatgagctcctccacagtcactagagtcaatccaatagagcacctttgggatgtggtgaaactggAGATTTGTATCATGGATGTGAAGCTGagaaatttgcagcaactgtgtgaagctgtcatgtcagtatggaccaaattctctgagaaatatttttcagtactttgttgaatgtatgccacgaaggattaaagtaGTTCTGTAGCAAAAAAaggtactagttaggtgtacctaatagttAAACACTTATGGGAAAACAGAAAAACAGCTTGTGATTTCTTTTGCAATTTTAAACTTAATCTAAATGATGTGATGTAACTTTAAAACTCATAAGCATTCATTAGTTAAACTGTCCTGGGGTCTTTTACCGCTGGGAAATTAGTCCAAGGCACTCAGTTTTGGTGTTTATATGTTTCTCCCTGCAGAGCGGTTATTGAGGACAGCCAGCCAGCAGTCTGACAGCAGCGGGTTTGCTGAGGATCCATCCACAGACGGTTCGGGTAATCACCTGAAGGTACAAGAGAGCTCAGACAGCTGTGACAGTGAAACCACAGTAACATCGCATGCTGAAGTCAGCACACCCATAGCATTGGAATACCCCAAGTTTGACAGATTCCCAAGTGAGGAAGTTCAGCTCTACCGAAGCACAACTACCCAATCTGCAACCAATCAAGAAGTCCATGACATCCCCAATCTCCAAATTCCCAATCCAAACTTGGACGAAATTAGCACCAATGGACTGCTTCTTTCTCCTGACTCAGATAGGGCATCTGTCATTGAGTCCGTTTCCACCATAGACTCTCAAGAAGGAAATTCAAACATGATGATAGATCATACAGTGGACTCCATACTGAAAGTAGCTCATGAGGGCAACTTATCCCAACCTAGTCTGGGCATAAATCAAAAGTCTCCTGAAGATCTACTGGAGCAAGACTCCTCATCAGAGCTTCCAGACTCATCAGATCTTAAGCAGTCCCACCTTACAGCTCAAAGGAGATCCATGGCACTCCACACAGGCCATCAAAGATCATCCTCAATGGAGGAGGAGCGTCCTGGCCGAGTGTGGGTGAGGGATCGGGGCCTGCTGAGGGAGAGCCAGGAGAGGAATCCTTTAAGGAGATCCAGCTCCCTCCCATTATCTTCGCTCAACCCGGCTCGCGTGGTCACCTCCATGCGCATCCAGCTTGGAAAAGGTTCAGTCAAGCACTGTACCCCGCCATCATACACATACCGCTATGAGGAAGACCATTGCAGTGACCGAGAAGAAGTAGACTCCATCTTGGAGGAGGATGAAGTGGATGGTTCGGGTGTCCAATCTGCGCTCCCGAACTCTGGATCAAAGATGAACAGAGGAACTTCACCACCACCTCCACCACACCCTCTCGATATACCCCAACATCTGGCTCGCTCCTCCACCTCGCTTTATAGCGTTCCCGCTGACTGGCCGCACAGGCCTTTGGGTGAAGGTACAAACTGGAGCGCTAGCGTCCCTAACCTTTCTCATTTTACAGCACCATCCCACTTTCCTCATCACGGAACCTTCTACTCTCCGCAACACGGAGTGTCCTACAATTCCTCATACCCATCTAGGCTTCCCTTCCCACAGTACCAAAACTCGCCTTGTCCTCCACCGCTTCAAAGCAACACATTTGTTCCACCACAGGGGGCACACTTTACACCTCAGAACAATATGCATTATGCTCACCCGCACAGTGCTCCCTACAACCCATTCTATCCATCTAATAACATTCCTCAAGGAACACCCTATGACCCATCGTTGAATATGCAAGGCAACCCGTACCCAAACCATGTCCCTCTTGCTCAATCCCACAGCGCCCCTTACAGTTCGGGATACAATGGTTCACCTCATCACCCTGCTGCTGTTTACAGCCATCCGTATTATCCCTCACCCGCCTACCCTTTCTCATTTGGGACGCCTCCTGCCCCTACCCCTGCGATGGGCAGCACAGAGATGCAGCTCAGGAGGGTCCTGCATGACATTCGTGGGACAATGCAAAATCTTGGTCAGAGCTCATCCGTGCATGGAGGAGACACACCCATGGACAGGATCGGCACACCGCGCTCCGTCCAACCGCTTTACGAGGTACATCATTTCCCAAAGAGGAAGCAGTCACATGCTAGTTTGATTTTTCATAACTTTGAGTTGCATCAGACTCTTACAAAACGCAGATGA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090824-1 Predicted to enable actin binding activity. Predicted to act upstream of or within COP9 signalosome assembly and positive regulation of T cell receptor signaling pathway. Predicted to be located in plasma membrane. Orthologous to human ITPRID2 (ITPR interacting domain containing 2).

Ensembl:

ensembl_id ENSDART00000185947

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073565 lncRNA upstream 517359 43800876 ~ 43879792 (+) True XLOC_037388
TCONS_00073563 lncRNA upstream 595687 43798143 ~ 43801464 (+) False XLOC_037388
TCONS_00075188 lncRNA upstream 1491529 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00075187 lncRNA upstream 1495614 42732991 ~ 42901537 (+) False XLOC_037385
TCONS_00073574 lncRNA downstream 26812 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA downstream 50983 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00073584 lncRNA downstream 591487 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00075191 lncRNA downstream 635605 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00075192 lncRNA downstream 708336 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00073570 mRNA upstream 27294 44304980 ~ 44369857 (+) True XLOC_037391
TCONS_00073567 mRNA upstream 309084 44034790 ~ 44088067 (+) False XLOC_037390
TCONS_00073568 mRNA upstream 309084 44034797 ~ 44088067 (+) False XLOC_037390
TCONS_00073569 mRNA upstream 316651 44034990 ~ 44080500 (+) True XLOC_037390
TCONS_00073564 mRNA upstream 513884 43799829 ~ 43883267 (+) False XLOC_037388
TCONS_00073573 mRNA downstream 26545 44430705 ~ 44487210 (+) False XLOC_037393
TCONS_00073575 mRNA downstream 26814 44430974 ~ 44486087 (+) False XLOC_037393
TCONS_00073576 mRNA downstream 27014 44431174 ~ 44489978 (+) True XLOC_037393
TCONS_00073577 mRNA downstream 317648 44721808 ~ 44824500 (+) False XLOC_037395
TCONS_00073578 mRNA downstream 318045 44722205 ~ 44825419 (+) False XLOC_037395
TCONS_00073566 other upstream 541541 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073561 other upstream 621786 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073560 other upstream 1065640 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073552 other upstream 2271767 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 2301974 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073582 other downstream 528015 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 592109 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073586 other downstream 659995 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073589 other downstream 822941 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073592 other downstream 1136317 45540477 ~ 45540593 (+) True XLOC_037402

Expression Profile

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