RNA id: XM_039795430.1


Basic Information

Item Value
RNA id XM_039795430.1
length 5652
RNA type mRNA
GC content 0.45
exon number 11
gene id syt7b
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 23970698 ~ 24071149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAGAGGAATAAGCCTGGGATGGAGGCTGCCAGCTCTCCAGATTCTGTGAGAGGTCGAGGGGAAAATAAAGCCATCAAcCACAATGATTTGGACAGAGACTTTTGGAATAACAATGACAGCAGCAACGTGCAACAGAGATGGAGCTCCTACCCGCCGAAGGAGTTCCTCTTAAACATGTCTCCCTATGCTCCCTACGGAGACCCTCGCCTCACGCCCAAGTGAGTCTCAGTCATGGCTGTGGGGCCGTGGATAAGGGTGGGCAGTGTGGTGCTGGACCCTCATCGGGGGCCAGTGACAGCGGGGGTGGTTCTTGCTCTGGGGCAGGGCCCAGTCGCAGTGACAGCATTCGAAGCATGGTGACGGGGGGCAGCAAGGCCGGTCGCTGGCAGAAGGTCCAGAGCCACATGCATGCCGGAGGCCTACGGTTTGGCAATTTCGGGGACGCTTCCCTCTCGTCTGCTTCCACCCTGGAGCACATCCCGTCCTCGGCCGTGGCGCGCCCTCGGCCTCTGGTCCGGCAGCAGAGCCTCCAACAGCCCCTCACTCACCAGCCCCCTCCGGGCCCAAACGACCCCCCAGTCACCTCACAGAGCCTGGGCCAGCTGCACACAGGCCCAGGTGGCGGGGGACACCGCGGGGGCCCGCGCGGGGTCCGGGGGAGTCCGGCTGGAACCTCCCGGCACAGAGGAGCAGGGACAGGTCGATCGAGGTCAAATCCTGGCAGCTGGGATCACATGGTGGAGCAGATCCGCCACAGAGGGCTGGATGTCAAGTCGTTCTTTGAGGGGAAGATGGTTGTTCTATCTCTAGCAATCGGGCTGGCTGAACAGGATGATTTCGCCAACCTCCCAGATCTCCAGGAAGCTCCAGCAAGCATAGAGAACGAAACCACACCAGAAAAGAGGACTCCGGGTAACAAACCAGGCAGCAGCCCCAGAGGTCAGACCCCAGACGAGACCGGACGTCGCCACGATGCCAACTCCTCTGTTTCTGACTTGGCCAACTCCGTCACCAGTGACATGCTCATGTTGTCTCCAGGTTCGGAGGATGATGACCACGAGGGTCAAGTCTGTGAGAAGCTGGGTCGTATTCAGTTCAGCGTTGGATACAGTTTTCAGGACTCCACCCTCACTGTCAAAGTTCTCAAGGGCCAGGATTTGCCTGCTAAGGACTTTTCTGGCACCTCTGATCCGTTTGTCAAACTCTACCTGCTGCCAGACAAGAAGCACAAACTGGAGACCAAAGTCAAGAGGAAGAATCTGAACCCCCACTGGAATGAAACCTTCCTGTTTGAAGGATTCCCCTATGAGAAGGTGGTCCAGAGGACTCTATACCTACAGGTTCTCGACTACGACCGCTTCAGCAGGAATGACCCCATTGGAGAGGTGTCCATCCCCCTCAACAAACTGGACCTGGCCAACATGCAGACTTTCTGGAAGGAGCTGAATCCATGTAGCGATGGCAGCGGGAGTCGAGGGGATCTGCTGGTGTCTCTGTGCTACAACCCCACAGCCAACACCATCACTGTGAGCATCATTAAAGCACGCAACCTCAAAGCCATGGACATTGGAGGCACTTCTGACCCCTATGTAAAAGTGTGGTTGATGCACAAGGACAAGCGtgtggagaagaagaagacggtGGTAATGAAGCGCTGTCTAAACCCTGTTTTCAACGAGTCCTTCCCCTTTGACGTGCCTGCTCACGTGCTGAGAGAGACCACCATAATTATCACCGTCATGGACAAGGACAGGCTCAGTCGCAATGATGTCATTGGAAAGaTTTATCTTTCATGGAAGAGCGGCCCAGCAGAGGTAAAACACTGGAAAGACATGATGGGTCGTCCTCGTAATCCTGTGTCCCAGTGGCATGCTCTCAAGGCCTGAGGGACCCAAGGACCAACCTGCCTACAGTGTTTTCCCCTCAGAATTCAGCATCAGCCCCTTCCCTTAGCACATATCCCCCATATTTCCTAACTGCAGTGTTGGGCTGCAGACAATGTGTGTCATCTCTTTGTTCTCAGGCCTCTTTGATATTCTCCGCCCTCAGTCATCCCTAAAATTTCACCCTTGTCAAGTTCCGATTCCCACCTGACCCTTGTCTCATCTCTTTTGTCAGAACTTAAAAATGTCTTTGATGTCTTTCCTCACTTCCTCCTTGTGACCTTTTTCAATGAGATTTTTCTTCAAGATCATTCTCAGTCTTTCCTTCACCTTGTCAACCATTCCCAGTGTTCAACAACAGAGCAGTACCTCTTGCCACCCCTGACTAAAAACTACCAACCAAAAACGTATCAAACTAATATTCCAACAATTCTCTGTGGCGGCAAGACGTGTGCGTGTGAATGGCACTGACCTGTGCAACCCATTTATTCACCTACATATGGTGTTGCAGTGAGGAATCTTCCACTCTGCTCCTCGCCTCTTCGTTCAAGTCCTCTTCCGTTACGTCACTATTCCTGCATACCTTTATTAAAATGCCTGAAAAATCAGGAAAACCGACACAGGCAATGGAAGAGTGATGGGctgtattttaaattaatttttaagTGGAATTGGACTCTGTCACTCAACTCATGTTTGAtctttttcacttttcactCTTTCTCTGGCACCACTGTAATAATTCTTCCTTGGCTGGAACCCTTTGTCGTCTGTGCGTGCTGTGGGTGATGTGCTGTAACCCCAAATGAAGTTCttcgacaaaaaaaaaaaaaaggatatgaACATGAACGTTTAACGATGGTCCAATAGGGcaagtgtaaaaaaaagaaatatgttccaatttttttttttttttttaagaaatcccaatagacagaaaaaaatgagTAACGTGAttaatgttgtgttttctttttggaTTTTCAAAAGAACTTACAGAATCAACCTGTTCTTCCagacacagaaaataagcaaaaaGCCAgcttccatgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtaaataaGGGAGTATTTTGCACAGCTAAATAAGACTGTAGACTATAAGACTAAGAAATTGTTGAAAACAGCTCTTGATAAcgataatgaaaataaggtATTGTTAGAATTTGTGGTGTTGAAGTTAGCTGAAGACGTGGGGAGGTCACTGATGTTAAAGGATCAGTCCACCCAAatcacagacacatatacagtatttactaACATACTCCTAGTGGTATTAAGCCAGGCAGATAGTTTCAGATGTATTTGTGGTGGGTTTGATCTGCTGAAATCACTGCTGCCACCCCAAATACAAAGGAGATAAATAGGATTTTTATTGTGGGGCTCACTACATTAAAAAACTCCACAGCAGCTTGTCTCTCCAGAAATAATGTTCAGGTTAATTGCATAATCCAAAAAACCCTCAGTGAATGGTTTTACATTGGGACTGGGAGAAATCGGTGAAAGCTGCTGACAACAACACCTATCCCAAAAACATTGATTATGAAACTTCCTGCGTAGCTTGATATCACTTGGGCTAATTGTTCTTGTTCTCATGACATAAAAACCTAACTctcatgttatgttttttttttcaaccacatctcacagttttcctcagcagatggagtttgcaGTTGAGTCCAAGATGACCTGGTGGTAAACAGACTGCtcccctcccaccccccactCCCCACCCTCCCACTTGCACACAGTGGCCTTGCACCAATACGCACCAAGGCCAAGACATCTGTGATGGCGCCAAAACACCCTGAGGAAAATTAAATCATTGAAAGCAAGGACCGCACTGCACCGCCCCACAACTGGTTAGTTTTGATGCGGTGCCACTTTGTGCAAGCCAGGAGGAGGACCCTGAGATGCAGTCAAAATGGAAAAGCTAGAAAGTGGACCTTTAGTTTAGATTTCTTTTGCCAAAATACACGCAATCATTTGTGATTTGGGTAAACTGACAATTTATGAACGTGGGTATTAAATGACTTTGTTATGATTACAGATAGTAATATGTTAAGTAATCAGAGGTagatgaaataaataataaaataaaaacgcacTATGCCTGTCACCCACATTACAATGTGTTTATCTGCTGCATAAATTTGTGCATTAAACCGGGAATAGGCATTACAGAATACTATaagccttttttgtttttcatttttacagaGCACTATGAGTCCAAGGATAATATTAGACATgatatttagtttgttttttggggggttgaACTAAGTACAAGTCAGTCTTACAGTTGTTTGCTTGAATCTGACCTCCTCCATGTCCCATATAGACATTTATGAAACAAATGAGAGTAATAATATCTGGGGGTAAAGTCTTTTTACATTCCATTGTtcgtttttgtctttgtgtgtgtatgtgtgtgtgtgtgtcaatatttgaactttagtttgtgtgattgtATTTCCTGTgagtccctctgtgtgtgtatatatatatctgcacTGAGTTCTATTTTGCCAGTTTAATACAGAACAACATTGTTTACCGTTTTTATTCTGTATGAAACAATCcagatgtacaaaaaaaatatatgtttttttaaaagtcgtCACTTCTTTAAGAATCACTGCACTTGTTGACGATGATGCTGGAACAAACCTCTCTTCATAGCGGGGTTATTTTCTTCGGGTGTGGTATGACGTAAATCTGTTATACATGAGGTGAGAGTGAAGGTCAAAGGGGAAATGTCACAAACAAGCTTTACAACAGATGGATAAAAACCTGTTTTCTTTGACCATCAtacatcattttttatttcagacGGAAGCAGCTTCCAACATTTTGTCCTATCTGTCCTTCCGATCTGATTCACCAAGACCAAAAAATGAAGGGTGGCACCTTAACATCACAGCTGACGTGCCCCAAAACACCCCCGTCGTGCACACATGCTTTCTGGCACAAAGTGTTCTGTGTGCCTTATAAACCCTGCCACGCCTTTGCTCTTCACCATATGTGCTCCCTCTCCAAGTGtcagggagggggggaggaaaaaaaaggtgagACAGGAGATAATCATCACCTCTTTGCATCACTGTTAGCTACATCTCAGGTCAGAGCATCGGAAGATCCCAAAATAACCAGGAACACAGTCAGCTGTCTGTCCTGATGGCCCTGTGTGTGAAACAAGgcattatttacagtatttacattCCAAAAGCTTATTGAAAGTCACTTTATCAATGCAACTTGAATATTGGTTGAATAACAGTCAGGGTTTGGTGTATTTTAGTTTTAAGAAATCAAACTAGATTGTGTCAGTCTACACTCTTCACTGGCCAAATACCATAAACATATATAGATTTTACTGGAGAAGCTCACATTTCTGATTTAGGGCATTCTCTTGGGGGACTGCTTGATACAAAGAGAGGTTAACCagcaacattttaatttatatactgtacaaatGATTGTGAAGTGTCctgtatgaaaaaaagaaataagaaaatCATCAGTATTTACTGGGGTTGTTGATATCTGTCTGTCCTTGGTATCACTCAGCCCCATCTTTCAGTCCCTTTTCTCTTTGTAGTTACACATCTGTAGGGTGCACAATGTTAAATATcaaccatttatttttttgaaatttgtacagtgtatataaaaatataaatgtgtatatAAAACAAAGATACTTCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39118 lncRNA upstream 59105 23960107 ~ 23962332 (+) True G29460
TU39096 lncRNA upstream 141995 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 277548 23742705 ~ 23743889 (+) True G29438
TU39087 lncRNA upstream 288966 23727012 ~ 23732471 (+) False G29433
TU39083 lncRNA upstream 298787 23721197 ~ 23722650 (+) True G29432
TU39145 lncRNA downstream 79361 24150510 ~ 24150755 (+) True G29477
TU39240 lncRNA downstream 155702 24226851 ~ 24227916 (+) True G29535
TU39280 lncRNA downstream 379809 24450958 ~ 24454877 (+) False sox6
TU39278 lncRNA downstream 380225 24451374 ~ 24455669 (+) False sox6
TU39279 lncRNA downstream 384084 24455233 ~ 24455669 (+) False sox6
XM_039794767.1 mRNA upstream 145917 23871057 ~ 23875520 (+) True sord
XM_039795600.1 mRNA upstream 151216 23867954 ~ 23870221 (+) True terb2
XM_039795662.1 mRNA upstream 452887 23550192 ~ 23568550 (+) True LOC120556218
XM_039795501.1 mRNA downstream 9500 24080649 ~ 24085815 (+) True LOC120556108
XM_039795505.1 mRNA downstream 22094 24093243 ~ 24125820 (+) False dagla
XM_039795504.1 mRNA downstream 22094 24093243 ~ 24125820 (+) True dagla
XM_039795506.1 mRNA downstream 22094 24093243 ~ 24125820 (+) False dagla
XM_039795507.1 mRNA downstream 56311 24127460 ~ 24149905 (+) True ext2
TU39086 other upstream 289731 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 884410 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 1028935 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 1139785 22764719 ~ 22881652 (+) False ankrd11
XR_005638781.1 other downstream 164575 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 380163 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 380225 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 1893530 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 1895028 25966177 ~ 25966255 (+) True LOC120556588

Expression Profile