RNA id: TCONS_00002843


Basic Information

Item Value
RNA id TCONS_00002843
length 890
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id XLOC_000358
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30074635 ~ 30079529 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTCAATCTGTCCGGCCCGCGAATAAAGCTGTGGAAGACGTCTTGCAGCATTTCTAACTACCGAGGCACTGTGAACCCCTGAAACTTGATTCTGTTGTTCATGATTTACAATCTGAAGACTATCAAGAGATCAAAGGAATAAAGGCCAGACACCAGAAACAAGCAGCTCATCACAACCTTCCACAGCCTTGCATAGTTCACCTGCAAGTTCTCAATCGTCCTCCACCAGCAGCTCCCAAAGCCCAGATGTAGACTGGGTGGATACGTTTCTGATACCATGGGATACATTTTTTGGAGAGAGAAAAACTACCAAGTTCACGAATGAGAAGAGAGATGGTCCGAATTGTGGCCAATCCTGCTTTTCATCGAAGCGTTTCCTGCTGTGTGTGGATCGAAATGTTGTACATGACAACATCCCCTCCTTTATTTCTGCCCTGTGCATGATGTTTGGGAGCTATTATTGCTTCGACATCCATTACCCATCAGAGCTGGCATCAATCTTGGAGTTTTTGCAGAAGTGTTTCTTCTCTATCAACCCAGAGAAAGGCACTAAAGTGGAGAAGACAAACACAGCCCGTCTTCATGTGAACCCAAGAGTTCTTACCTTGATTCAGGAACTTTCAGATCATGAATGGCGTGACGTCTAAATATGGACTGAAGTCAGTAAGATTTGACATACAGTGAATGCCAGTTTCTCAGGTTTGTTTGATCTGCCATGCTTAATGTATGTGTTTAAGTTAGTACACAACTATTAGCGTTTTTATCTAGTGTTTTCTGAATTAGGTTATTCCTGAATTGGTTGTTTGTATggaatatttgtttataaaacaactAAATGTTCTTAAATCGATTTAAAAGAAAAGTTGGtagcactttaaaataactacaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0030182 neuron differentiation biological_process
GO:0006413 translational initiation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0048699 generation of neurons biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000607 lncRNA upstream 265238 29806494 ~ 29809496 (+) True XLOC_000355
TCONS_00000598 lncRNA upstream 566261 29507647 ~ 29508473 (+) True XLOC_000350
TCONS_00002842 lncRNA upstream 573700 29500308 ~ 29501034 (+) True XLOC_000349
TCONS_00000597 lncRNA upstream 622001 29451465 ~ 29452733 (+) True XLOC_000348
TCONS_00000596 lncRNA upstream 629015 29444452 ~ 29445719 (+) True XLOC_000347
TCONS_00000621 lncRNA downstream 643851 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00000626 lncRNA downstream 774440 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00002845 lncRNA downstream 775861 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000630 lncRNA downstream 974886 31054415 ~ 31055182 (+) False XLOC_000367
TCONS_00003082 lncRNA downstream 1061590 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000610 mRNA upstream 120988 29862074 ~ 29953746 (+) False XLOC_000357
TCONS_00000612 mRNA upstream 198090 29862133 ~ 29876644 (+) True XLOC_000357
TCONS_00000611 mRNA upstream 198710 29862082 ~ 29876024 (+) False XLOC_000357
TCONS_00000609 mRNA upstream 213839 29858032 ~ 29860895 (+) True XLOC_000356
TCONS_00000606 mRNA upstream 250359 29798140 ~ 29824375 (+) False XLOC_000355
TCONS_00000614 mRNA downstream 4049 30083578 ~ 30310689 (+) False XLOC_000359
TCONS_00000613 mRNA downstream 4049 30083578 ~ 30310689 (+) False XLOC_000359
TCONS_00000615 mRNA downstream 20728 30100257 ~ 30310689 (+) False XLOC_000359
TCONS_00000616 mRNA downstream 23768 30103297 ~ 30156998 (+) True XLOC_000359
TCONS_00000619 mRNA downstream 342614 30422143 ~ 30438036 (+) True XLOC_000362
TCONS_00000608 other upstream 214361 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000579 other upstream 994398 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 2072797 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 2079123 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 2343754 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000617 other downstream 86424 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 147862 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 876396 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 977711 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000645 other downstream 1627140 31706669 ~ 31722875 (+) True XLOC_000376

Expression Profile

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