RNA id: XM_039795473.1


Basic Information

Item Value
RNA id XM_039795473.1
length 2807
RNA type mRNA
GC content 0.47
exon number 14
gene id tdrd3
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 20475627 ~ 20497725 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTCTCTGTCAGTGACGCATGTTACGTAGAGTCGTTCAATATTCACATTAGCGAGCTTTAACATTGAGAATATGTATTACCGAATCAGATAGTCGTTATTCAAGTGTGCTCAATTTAAAATTATTGGTGTCGTTATTTGCACATCTACAGTGTGGACGAAAATGACCGATTTGACAGATTCCTTGACCAAAGAAGGCTGGTACCTCAGTGATGAAGGCATAACAGAACTGAAAGGATCTGCTGAGAAAATAACACACAATGACATTATTCGTATTGCGCTTGACAGTGACCTTAGGCCTATTGGGAGAAAATTTCTACCGTCTGATATCAATAGTGGAAGAACTGACAAGTTGGAAGGTCCATGTGTTCTTCAGGTGCAGAAGGTGAGGAATGTCTCGGCTCCTAAAGACCACGAGGAGTCCCAGGGCGCACCTCGAATGCTGCGCCTACAAATGACAGATGGGCATACCAGCTGTGTAGGATTGGAGTTTAAACACCTGTCTAAGATTAGtctaAATACCCCACCGGGAACAAAGGTAAAGCTCCTTGGTACAGTCCAGGTTAAAAATGGTCTTTTGCTGCTGGATGACTCAAAAATCTCTGTCCTTGGGGGAGAGGTTGATCACATGGTGGAGAAATGGGAACTACAAAGGAGTCTAGCCAAACACAGCAGGAGTAACATTGGAGCAGAAGGTGGACCTCCTCCCTTTGTGCCATTTGGTCAGAAGTGTATGATGAAAGATGACGTAGACAGCACAGAACTAGACCAGAGGAAGACCCTCAAAACTCAAGATGTGGTCAAAAATCCTGACGAGAATATTGAGTTTGAAAAGCAGCGGACAGCAGCTATTGCTGAggtggccaagaccaaagagGCTCCACGCACGTTTGGTGGTGGAGGGAATGCAGGCAGTAATTTATCTAGTGCTGCTTCCTCCTTCCGAAGTCGAGACTCGTACCAGAGGAGACGAGAAGACCGGGTCGAAAGAACGGAAAGCAGACAAGATGGAAACTATCGAGAGCTGGTGGATGAACGTGCTCTCAGAGATATCATGGAGATGGGCTTTAACAGGGAGGCTGCTCGGCTGGCTCTAATGGATAATAACAACAACCTTGAAGTGGCACTAAACAGCCTCTTGACTGGATCTTCTGGTAGCAGACCTGGCCCTGTGGTAGCTGAATCTATAAAGCCCCAACCCAGAGccagaggaagaggaagaggcagaTCCAGAAatgaagatgaggaggagggagcagGGGGAAGGCCATCTGGACCAAGCACTCTTTTTGACTTTCTTGAATCCAAGATGGGTGTTTTCTCCATTAATGAGCCAAAGAGCCAGGCACCTCAGAGACACCATGAGAGTAAAGCAAATTTCTCCAACTCAGACTATTACTGCAAAGACCAATCTCAGACCAAGTTCTCATCGCATAATGACCACAGGCACCAAAGGAATGACAGACCACCTCGCTTCCACAGAGACTTTGATTTTCCCAAACCTGGTCAGGAGCCTCTCTCTAACTGTACGACCTCCCAAACATCAGCTCCGGCCCAGCAGTGGAAGGGCCAGGAGAGATGGTCACGAGGCACATCAGACAGATCGCAAAATGACAGGAGAGAAATGAGAAATGAGCAGATTTCCCCTTCATCCTTCTCGACTTCTTTCACACATTCAAAAGAACCGCAGCAGCAGGTGGAGTTTAGTGGACCTTACCACCAGCGATCCAGAAATGGAGATGGTGGTGGTGGGAACATGGCTGGACCGTCTAGCAGGAGAGGGCTCAGAGACAACATGCCTGCACCTAAACTGACCGATTCTGCAGGCAGTGAGCCCGATGGAAGAGGAAATAGTAAACGTACCGACAGAACTGAAGAACTCGGCAACAACAGGAGGAAGGGGAAGACTGACCGGTCAAACTCGGACCACCATGACAGACAAAGGGATAGCCGGCCACCCAACTTTAACCTGAGGGGAGGAAACTCGGGGACATCTCAGTCAGAAGTGGGGTTATCGCAGGATTGTCGTATCACGACAGGGGATCCTTCTCATTTCCAAAATGGAGATATGGAACACAAAAGAACTGGGCCAATCAAGCCAACAAACTCATCGTGTCCCCCCAGCAGGGAGCCACCCCCCAAGAAAAACACTTTGAATAACCCAGGGCCTAAAAGAAGATCAGGACAAGGCAAAGGTCATGGCCCTCGAGGACCAGAGAAAAGTCATTTTATGGAACAAGCTTGGAAACCTGGAGACCAATGCCTGGCACTGTACTGGGAAGACGGCAAGTTCTACCATGCCAGAATAGATGCTGTGCATCCATCAGGCTCCACGGCTGTGGTTGTATTTAGTGATTATGGAAACTGCGAAGAGGTCCTGCTGCATAACATCAAACCCGTTTCTGCCGACATGTTGGAGGAAGATGATGGTTACTACGACAGTTCACTAGAGTTTCGCCTTGGGGGAGATGGACAGCCCCGACGCACAAGACCCACTCAGCAGTATTACCAGCCACCTAGGGCACGAGATTGATGTGTCTGCGTTTACACTGGCAGAGATTATGTCACTTTCTGCAACAATCCGAGTGcttcctgatttttttttttttttttttcttctttcttttttaattgtcCACATCGCCAGGACTTAAAGAACTTTTCAAAGGGCTTggacaaaatgcaaaaaataaagaaaaactgaCATGAGCACCTGTCGATTTCGTTAAGGACATATCTACTTTATATGTTGTGAAGATTTGTTAAATGAATGCATTCAAATAAACTATTCTCATGGTCTGTAGCGGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38175 lncRNA downstream 50888 20424419 ~ 20424739 (-) True G28726
TU38171 lncRNA downstream 119283 20356047 ~ 20356344 (-) True G28722
TU38162 lncRNA downstream 160205 20141233 ~ 20315422 (-) False LOC120556571
TU38163 lncRNA downstream 160205 20281036 ~ 20315422 (-) False LOC120556571
XR_005638867.1 lncRNA downstream 160291 20281042 ~ 20315336 (-) True LOC120556571
TU38239 lncRNA upstream 266986 20764711 ~ 20764937 (-) True G28774
TU38247 lncRNA upstream 378307 20876032 ~ 20876286 (-) True G28782
TU38261 lncRNA upstream 575825 21073550 ~ 21073904 (-) True G28793
TU38264 lncRNA upstream 640324 21138049 ~ 21138377 (-) True G28796
TU38265 lncRNA upstream 723411 21221136 ~ 21221445 (-) True G28797
XM_039796124.1 mRNA downstream 196441 20253713 ~ 20279186 (-) True LOC120556479
XM_039796201.1 mRNA downstream 963914 19508685 ~ 19511713 (-) True gpalpp1
XM_039794272.1 mRNA downstream 967095 19500529 ~ 19508532 (-) False gtf2f2a
XM_039794271.1 mRNA downstream 967095 19500529 ~ 19508532 (-) True gtf2f2a
XM_039794265.1 mRNA downstream 980214 19459171 ~ 19495413 (-) True LOC120555523
XM_039795143.1 mRNA upstream 423219 20920944 ~ 20990225 (-) True pcdh17
XM_039795979.1 mRNA upstream 854806 21352531 ~ 21362693 (-) True LOC120556394
XM_039795977.1 mRNA upstream 855538 21353263 ~ 21362696 (-) False LOC120556394
XM_039795980.1 mRNA upstream 855538 21353263 ~ 21362445 (-) False LOC120556394
XM_039795978.1 mRNA upstream 855538 21353263 ~ 21361740 (-) False LOC120556394
TU37839 other downstream 1349251 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 1349251 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 1413477 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 1755608 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 2055128 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 1083317 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 2379906 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 2418129 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 2801817 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 3415630 23913355 ~ 23958933 (-) False apba2b

Expression Profile