Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073576 |
| length | 1237 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 6 |
| gene id | XLOC_037393 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 44430705 ~ 44489978 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004864 | protein phosphatase inhibitor activity | molecular_function |
| id | description |
|---|---|
| ko01009 | Protein phosphatases and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-040718-273 | Predicted to enable protein phosphatase inhibitor activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Is expressed in nervous system and trigeminal placode. Orthologous to human PPP1R1C (protein phosphatase 1 regulatory inhibitor subunit 1C). |
| ensembl_id | ENSDART00000149726 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073565 | lncRNA | upstream | 551382 | 43800876 ~ 43879792 (+) | True | XLOC_037388 |
| TCONS_00073563 | lncRNA | upstream | 629710 | 43798143 ~ 43801464 (+) | False | XLOC_037388 |
| TCONS_00075188 | lncRNA | upstream | 1525552 | 42732992 ~ 42905622 (+) | False | XLOC_037385 |
| TCONS_00075187 | lncRNA | upstream | 1529637 | 42732991 ~ 42901537 (+) | False | XLOC_037385 |
| TCONS_00073584 | lncRNA | downstream | 505669 | 44995647 ~ 44998575 (+) | False | XLOC_037398 |
| TCONS_00075191 | lncRNA | downstream | 549787 | 45039765 ~ 45044991 (+) | True | XLOC_037399 |
| TCONS_00075192 | lncRNA | downstream | 622518 | 45112496 ~ 45116841 (+) | False | XLOC_037401 |
| TCONS_00074933 | lncRNA | downstream | 771406 | 45261384 ~ 45261761 (+) | True | XLOC_037403 |
| TCONS_00074934 | lncRNA | downstream | 1058809 | 45548787 ~ 45553378 (+) | False | XLOC_037404 |
| TCONS_00073571 | mRNA | upstream | 10794 | 44391254 ~ 44420380 (+) | False | XLOC_037392 |
| TCONS_00073572 | mRNA | upstream | 27014 | 44397151 ~ 44404160 (+) | True | XLOC_037392 |
| TCONS_00073570 | mRNA | upstream | 61317 | 44304980 ~ 44369857 (+) | True | XLOC_037391 |
| TCONS_00073567 | mRNA | upstream | 343107 | 44034790 ~ 44088067 (+) | False | XLOC_037390 |
| TCONS_00073577 | mRNA | downstream | 231830 | 44721808 ~ 44824500 (+) | False | XLOC_037395 |
| TCONS_00073578 | mRNA | downstream | 232227 | 44722205 ~ 44825419 (+) | False | XLOC_037395 |
| TCONS_00073579 | mRNA | downstream | 232258 | 44722236 ~ 44757162 (+) | False | XLOC_037395 |
| TCONS_00073580 | mRNA | downstream | 232289 | 44722267 ~ 44825345 (+) | True | XLOC_037395 |
| TCONS_00073581 | mRNA | downstream | 342054 | 44832032 ~ 44839148 (+) | True | XLOC_037396 |
| TCONS_00073566 | other | upstream | 575564 | 43855495 ~ 43855610 (+) | True | XLOC_037389 |
| TCONS_00073561 | other | upstream | 655809 | 43775251 ~ 43775365 (+) | True | XLOC_037387 |
| TCONS_00073560 | other | upstream | 1099663 | 43331395 ~ 43331511 (+) | True | XLOC_037386 |
| TCONS_00073552 | other | upstream | 2305790 | 42099737 ~ 42125384 (+) | True | XLOC_037378 |
| TCONS_00073546 | other | upstream | 2335997 | 42040557 ~ 42095177 (+) | False | XLOC_037378 |
| TCONS_00073582 | other | downstream | 442197 | 44932175 ~ 44932293 (+) | True | XLOC_037397 |
| TCONS_00073585 | other | downstream | 506291 | 44996269 ~ 44997423 (+) | True | XLOC_037398 |
| TCONS_00073586 | other | downstream | 574177 | 45064155 ~ 45064269 (+) | True | XLOC_037400 |
| TCONS_00073589 | other | downstream | 737123 | 45227101 ~ 45334105 (+) | False | XLOC_037402 |
| TCONS_00073592 | other | downstream | 1050499 | 45540477 ~ 45540593 (+) | True | XLOC_037402 |
