RNA id: TCONS_00075190



Basic Information


Item Value
RNA id TCONS_00075190
length 966
lncRNA type intronic
GC content 0.32
exon number 1
gene id XLOC_037394
representative True

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 44455143 ~ 44456108 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TAATCACCACCATAAACTGTTTTATATGTCCATTTCAGTGCTGAACCTGTGAACATGCTAACTGCATCATAGAGTGGAGCTGGATTTCTGATACAGATATTGATTACTGATTACAAGGTGAGTTTAATGAAACATGATAACAtggtaaagttattattatttgctatgTGGTATTATTGTCCTAATaactgaaaatacaattaaaaaatgttaCGCATACATTATGCTTGTTAATTTTGTATCTTTCCTCATCATTGTAATTCTTGTCTTAGGCATCTTCTACTGTACCTGATGTAGAAAAGACCCTTGAACTACCTGCAATTCCTTGACTGATACTTTTTGGTATGTTTAGaactgtattttattactttagcAACTAAGGGTGTTTTCTCTGTATTTTAGCAAACATGGTAAATTcttttgaacaaaacaaaatacacaaatacataaattatatGTTCTGCCATATTTTACCCAAGCTTTCACTCACCTTTGGAAAACATTTTACTCAATTTACTAAATTACTCCATTTTAGTTGTTTAACACTTAGTTGTTTAACACGCTATGTTGAtcataaatattaagttaaataaatcacaaacatTGCAGTGACAATTTCACAATAcacagtatatactgtacatgttgaTTTCAGTGGCTGTCCAGGCGAGTCCACAATCAACATTTTCAAATACATGTATTGTGTTACAAGAACAGGGCTTTGGGACTAAGTAAAATTACGTCAGCTTCCCTCACATATATTTTCAACTAGAAAATATAATTTCATGTGACTgctgacattgtttttttcttttaaatgttttaggagAAAAACCAGGAAGCTACATTCATAAATGGATGATCAGTTTTGAGGGGCAAATAATCTGTGAGAGCATCCAGCCAAGTTTTCTGTCTGGTAAAGCTGCTGTGTTTTTAACTTACGACATTTTCAATGTGGAGAACCAA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00073565 lncRNA upstream 575351 43800876 ~ 43879792 (+) True XLOC_037388
TCONS_00073563 lncRNA upstream 653679 43798143 ~ 43801464 (+) False XLOC_037388
TCONS_00075188 lncRNA upstream 1549521 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00075187 lncRNA upstream 1553606 42732991 ~ 42901537 (+) False XLOC_037385
TCONS_00073584 lncRNA downstream 539539 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00075191 lncRNA downstream 583657 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00075192 lncRNA downstream 656388 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00074933 lncRNA downstream 805276 45261384 ~ 45261761 (+) True XLOC_037403
TCONS_00074934 lncRNA downstream 1092679 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073571 mRNA upstream 34763 44391254 ~ 44420380 (+) False XLOC_037392
TCONS_00073572 mRNA upstream 50983 44397151 ~ 44404160 (+) True XLOC_037392
TCONS_00073570 mRNA upstream 85286 44304980 ~ 44369857 (+) True XLOC_037391
TCONS_00073567 mRNA upstream 367076 44034790 ~ 44088067 (+) False XLOC_037390
TCONS_00073577 mRNA downstream 265700 44721808 ~ 44824500 (+) False XLOC_037395
TCONS_00073578 mRNA downstream 266097 44722205 ~ 44825419 (+) False XLOC_037395
TCONS_00073579 mRNA downstream 266128 44722236 ~ 44757162 (+) False XLOC_037395
TCONS_00073580 mRNA downstream 266159 44722267 ~ 44825345 (+) True XLOC_037395
TCONS_00073581 mRNA downstream 375924 44832032 ~ 44839148 (+) True XLOC_037396
TCONS_00073566 other upstream 599533 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073561 other upstream 679778 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073560 other upstream 1123632 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073552 other upstream 2329759 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 2359966 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073582 other downstream 476067 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 540161 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073586 other downstream 608047 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073589 other downstream 770993 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073592 other downstream 1084369 45540477 ~ 45540593 (+) True XLOC_037402

Expression Profile


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