RNA id: XM_039795501.1


Basic Information

Item Value
RNA id XM_039795501.1
length 2206
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120556108
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24080649 ~ 24085815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttcagtAATTTAGTTATTGTATAATTAATTAAATCAGAATTTAAATAGACCTTGACTCTAGGAACCAAATgtagtttgttgttgttaacCGGTAGAATATTCCTGACGCACTGAAATGTTCACGTACTAAAGACGAACGTTAGCATCATTAGCATTACGTTAGCTGATCAGAGAGCGAGTTCATAGTAACGTTACTATATATAACTAGTTGTACGTTAACTCATACAAAACCGTGCATGTATTTTGAAAGTGttcatttaaatataatttctaGATTTATGTCCGCTTGTCGTATTCTCGGTTTATCGTCATATTTTgatgtagctaacggtagagtATCATATTGTGCGGactcgttagctaacgttaaatgcaaGGCGTAACGTCAACAAAAACGCCTGAATATTGATAGTGCACCTGTCGTCGGTATGCACTGATCATTTGCAAAGTGTGCGAACTACActgaaaacaacacaaacaacccaACTGGCTGCAGTGCCATCAACTGAATCACCGTAGGCCCACGGGATGGCTGCTGCAGGACCTGCAGCTGGACCCAGTACCTCGAAGGACCTCGTAGATCTTTACGGTGACCTGAATCAAAACGACGACGATTTGGACAGAATTGCTGAAGCAAATGAACTTTTTGATGCTGTTCTGACTGGCTCAGTTGATCAGGACAATAAAGTTAAGACACATGTGGTTCCACCATCTAACAAGGAGGCTAAATCAACAATAGTGAAAAGCCAAAAAGAAGGAAACTCACTGAGGAGACTGTCTTTATATATTGGAAATTTCCCCTGGTGGACATCTGATAAGGACATTACATGCATGGCTCAAACGTTGGGTGTGAGGGACATTAAAGAGATCAAATTTGCTGAGAACAAAGTTAATGGCCAGTCAAGAGGCTTTGCCGAAGTGGTGGTAACCTCAGAAGAATCATTAAAAGTAATGTTGGAGAAAATACCTCAATGTCAGCTCAATGGGGAAAGGATAGACTGCCGTTTTGCCACTCGCCAGAATCTCAATTTGTTTGAGGACTTGGCAAATAAACGTATACCCCTGCGTCTGAATTCCAAAGATCCTAAGGACTCCGATACTTTGGATAAGATTCCCTCATTATTATCACAGGAGCCCAGCCCTCCGCCTATACCTCCACTTTTTCCATCACATCCACTTGCAAACAGGTTTCCATCATTACCCACCCCTTACCCTAATCATCCCCCTCCTCCCTTCCCACATATGCCGCCAAACATCCCCCCGCCCATGCCACCCCATTTGTTCCCTCCTCATCCAGTACATGTTCCCATCCAACCACCTCCCAGTCTGCACGTAAATCCAGCATTCTTCACCCCTGCACAAGACGGGCACAGCAGCAAAGCTTACAGCCAACAAAAACACACCCCTCAAAGTACAGATCGAGACTTTGAGGAGCTAATGAACAGAAATAAAGCTGTTGCTAGCAGTGCCATCAGCAAGGCTGTGTCTGGAGCAACAGCTGGGGACTTGCGGGTGGCCATGGAGACTCTGTTAACTGCCATTGCCATCATTAAGCAGTCCAGAGTGTATGGAGATGAACGCTGCCAAGCCCTGGTTACTTCACTCAAAGACTGTCTAGTCTCTATTCAGGGCAACTACGGCTACAGGAGTAGCAGTCGTTCTGGAGACGAAGAAAGATGCCGGGACAGGGGTCGtgacagagagcgagagcgtGACAGGGAACGTGAAAGAGAAGATCCTTTTGGTTGGGAAGGTGCGGGAATGTCTCGAAGACAAAGAGAACATTCCCGGAGTGGGGAGAGGGACAAGGAACGCTCACGGGAACGGGAAAGGGAAAGGCACAGAGATCACAGAGATCATAGAGACCGATACCGCTAACTTGactgatGGCGTGCTGAAGCGTGAAGCCAGGCAGACTTTGTTTCTGCACCAACTTGTATACAAATCTGGTGGAATCTAAGGTGAGACTGAAGATGTATCTCCAAAAGTCTAAAGTGTACTTTTCTGTTCTTCACCAGTTGTCTGTAAATACTGGGACTTTTAcctgttgaaaaaaatgtggtTGTAGATTTGTTGCTTGGACATCAGATTCCAATGCTTGCATGCACAGGAACATCTCTTAAtaacttataaaaaaaacagtgtaacATTTATCACTTTCTTTTGTATTAAATCTaaagattaaaaacacattCCCTGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39118 lncRNA upstream 118317 23960107 ~ 23962332 (+) True G29460
TU39096 lncRNA upstream 201207 23816706 ~ 23879442 (+) True G29441
TU39092 lncRNA upstream 336760 23742705 ~ 23743889 (+) True G29438
TU39087 lncRNA upstream 348178 23727012 ~ 23732471 (+) False G29433
TU39083 lncRNA upstream 357999 23721197 ~ 23722650 (+) True G29432
TU39145 lncRNA downstream 64695 24150510 ~ 24150755 (+) True G29477
TU39240 lncRNA downstream 141036 24226851 ~ 24227916 (+) True G29535
TU39280 lncRNA downstream 365143 24450958 ~ 24454877 (+) False sox6
TU39278 lncRNA downstream 365559 24451374 ~ 24455669 (+) False sox6
TU39279 lncRNA downstream 369418 24455233 ~ 24455669 (+) False sox6
XM_039795427.1 mRNA upstream 9500 23970698 ~ 24071149 (+) False syt7b
XM_039795426.1 mRNA upstream 9500 23970701 ~ 24071149 (+) True syt7b
XM_039795428.1 mRNA upstream 9500 23970703 ~ 24071149 (+) False syt7b
XM_039795430.1 mRNA upstream 9500 24021437 ~ 24071149 (+) False syt7b
XM_039794767.1 mRNA upstream 205129 23871057 ~ 23875520 (+) True sord
XM_039795505.1 mRNA downstream 7428 24093243 ~ 24125820 (+) False dagla
XM_039795504.1 mRNA downstream 7428 24093243 ~ 24125820 (+) True dagla
XM_039795506.1 mRNA downstream 7428 24093243 ~ 24125820 (+) False dagla
XM_039795507.1 mRNA downstream 41645 24127460 ~ 24149905 (+) True ext2
XM_039795036.1 mRNA downstream 120896 24206711 ~ 24222446 (+) False caprin1a
TU39086 other upstream 348943 23727012 ~ 23731706 (+) True G29433
TU38916 other upstream 943622 23136732 ~ 23137027 (+) True G29292
TU38851 other upstream 1088147 22992137 ~ 22992502 (+) False LOC120555548
TU38801 other upstream 1198997 22764719 ~ 22881652 (+) False ankrd11
XR_005638781.1 other downstream 149909 24235724 ~ 24309279 (+) False plekha7b
TU39283 other downstream 365497 24451312 ~ 24454877 (+) False sox6
TU39277 other downstream 365559 24451374 ~ 24454877 (+) False sox6
XR_005638876.1 other downstream 1878864 25964679 ~ 25964758 (+) True LOC120556589
XR_005638875.1 other downstream 1880362 25966177 ~ 25966255 (+) True LOC120556588

Expression Profile