RNA id: TCONS_00073579


Basic Information

Item Value
RNA id TCONS_00073579
length 920
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_037395
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 44721808 ~ 44825419 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTCGTTCTGGCCGTCAGGGCAacacctagaaaaaaaaaatacatccccGACGACGCGCCTGAAGCCCCTAACATGGGCGAATTTTAACACTAAAAACCGACTCATTTTTGCACCTTACCCTATAACACTACACAAGGAATCCTTTCGGTTGCGATTAAGCTCGTTTTGACGGTCGTTTGAGCCATGTCTCGGGGCGCGATGCAGCCGAGCCAGCAGAAGCTGGCGGAGAAATTGACGATCCTCAACGACCGCGGCATCGGGATGCTCACTCGCATCTACAACATCAAAAAGGCCTGTGGAGATCCCAAGGCAAAGCCTTCCTACCTGATTGACAAAAACCTGGAGTCAGCCGTGAAATTCATTGTCAGAAAATTCCCAGCCGTTGAGACCCGCAACAACAATCTTGCACAACTACaaaaagaaaagtcagaaataCTGAAGAATTTAGCTCTATATTACTTCACCTTTGTGGACGTTATGGAATTTAAGGACCACGTTTGTGAACTGCTGAACACTATTGATGCTTGTCAAGTTTTCTTTGACATTACTGTAAATTTTGACCTCACAAAGAACTACCTGGACTTGGTAGTGACGTACACTACCCTGATGTTGCTGCTTTCCCGAATTGAAGAGCGCAAAGCGATAATCGGCCTCTACAACTATGCCCATGAAATGACACACGGTTCAAGCGATCGAGAATACCCCAGGCTTGGACAGATGATTGTGGATTACGAGAACCCACTAAAAAAGATGATGGAGGAGTTTGTCCCTCATGGAAAATCGCTGTCAGATGCGCTGGTCTCCTTGCAGATGGTGTACCCACGCCGGAATCTGTCTGCAGATCAGTGGAGAAACGCTCAGCTGCTCAGTTTGATTAGCGCTCCCAGCACTATGCTCAACCCAGCTCAATCTGACACG

Function

GO:

id name namespace
GO:0048812 neuron projection morphogenesis biological_process
GO:0031258 lamellipodium membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04810 Regulation of actin cytoskeleton
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection

ZFIN:

id description
ZDB-GENE-030131-4426 Acts upstream of or within neuron projection morphogenesis. Predicted to be located in lamellipodium membrane. Predicted to be integral component of membrane. Orthologous to human NCKAP1 (NCK associated protein 1).

Ensembl:

ensembl_id ENSDART00000145271

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073574 lncRNA upstream 252807 44430972 ~ 44469429 (+) False XLOC_037393
TCONS_00075190 lncRNA upstream 266128 44455143 ~ 44456108 (+) True XLOC_037394
TCONS_00073565 lncRNA upstream 842444 43800876 ~ 43879792 (+) True XLOC_037388
TCONS_00073563 lncRNA upstream 920772 43798143 ~ 43801464 (+) False XLOC_037388
TCONS_00075188 lncRNA upstream 1816614 42732992 ~ 42905622 (+) False XLOC_037385
TCONS_00073584 lncRNA downstream 238485 44995647 ~ 44998575 (+) False XLOC_037398
TCONS_00075191 lncRNA downstream 282603 45039765 ~ 45044991 (+) True XLOC_037399
TCONS_00075192 lncRNA downstream 355334 45112496 ~ 45116841 (+) False XLOC_037401
TCONS_00074933 lncRNA downstream 504222 45261384 ~ 45261761 (+) True XLOC_037403
TCONS_00074934 lncRNA downstream 791625 45548787 ~ 45553378 (+) False XLOC_037404
TCONS_00073576 mRNA upstream 232258 44431174 ~ 44489978 (+) True XLOC_037393
TCONS_00073573 mRNA upstream 235026 44430705 ~ 44487210 (+) False XLOC_037393
TCONS_00073575 mRNA upstream 236149 44430974 ~ 44486087 (+) False XLOC_037393
TCONS_00073571 mRNA upstream 301856 44391254 ~ 44420380 (+) False XLOC_037392
TCONS_00073581 mRNA downstream 74870 44832032 ~ 44839148 (+) True XLOC_037396
TCONS_00073583 mRNA downstream 237052 44994214 ~ 44998722 (+) False XLOC_037398
TCONS_00073587 mRNA downstream 355375 45112537 ~ 45122990 (+) True XLOC_037401
TCONS_00073588 mRNA downstream 469866 45227028 ~ 45540996 (+) False XLOC_037402
TCONS_00073590 mRNA downstream 670879 45428041 ~ 45540996 (+) False XLOC_037402
TCONS_00073566 other upstream 866626 43855495 ~ 43855610 (+) True XLOC_037389
TCONS_00073561 other upstream 946871 43775251 ~ 43775365 (+) True XLOC_037387
TCONS_00073560 other upstream 1390725 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073552 other upstream 2596852 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073546 other upstream 2627059 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073582 other downstream 175013 44932175 ~ 44932293 (+) True XLOC_037397
TCONS_00073585 other downstream 239107 44996269 ~ 44997423 (+) True XLOC_037398
TCONS_00073586 other downstream 306993 45064155 ~ 45064269 (+) True XLOC_037400
TCONS_00073589 other downstream 469939 45227101 ~ 45334105 (+) False XLOC_037402
TCONS_00073592 other downstream 783315 45540477 ~ 45540593 (+) True XLOC_037402

Expression Profile

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